; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028280 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028280
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionNuclear shuttle protein
Genome locationchr8:17544715..17546458
RNA-Seq ExpressionLag0028280
SyntenyLag0028280
Gene Ontology termsGO:0051027 - DNA transport (biological process)
GO:0019028 - viral capsid (cellular component)
GO:0043657 - host cell (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0005198 - structural molecule activity (molecular function)
InterPro domainsIPR000263 - Geminivirus AR1/BR1 coat protein
IPR001530 - Geminivirus BR1 coat protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX39376.1 nuclear shuttle protein [East African cassava mosaic virus]6.3e-1837.21Show/hide
Query:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK
        ++++ DK P++P GV  LP F ELFG  ++ YG   +      RY +    ++ +  D   V+  V + R+ YN RY +W+SFKD      GGNY+NV+K
Subjt:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA  V Y WVS + S C +Y    + + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

CAB65508.1 BV1 protein [Watermelon chlorotic stunt virus-[IR]]4.8e-1837.98Show/hide
Query:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK
        + L+ DK P++P GV +LP F ELFG  E  YG   V      RY I  +W++ +  D  +V+    + R     RY +W +FKD   +  GGNY+NVSK
Subjt:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA   C  WVS   S C +Y    + + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

QJF49245.1 Movement protein [Watermelon chlorotic stunt virus]1.1e-1737.21Show/hide
Query:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK
        + L+ D+ P++P GV +LP F ELFG  E  YG   V      RY I  +W++ +  D  +V+    + R     RY +W +FKD   +  GGNY+NVSK
Subjt:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA   C  WVS   S C +Y    + + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

QVH36217.1 nuclear shuttle protein [Watermelon chlorotic stunt virus]8.2e-1837.8Show/hide
Query:  LLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNA
        L+ D+ P++P GV +LP F ELFG  E  YG   V      RY I  +W++ +  D  +V+    + R     RY +W +FKD   +  GGNY+NVSKNA
Subjt:  LLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNA

Query:  FFVCYTWVSETTSICNLYLDTEMVFYG
           C  WVS   S C +Y    + + G
Subjt:  FFVCYTWVSETTSICNLYLDTEMVFYG

YP_001333682.1 NSP protein [Kudzu mosaic virus]3.7e-1832.94Show/hide
Query:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT
        M + +N  I+ +++ P +      R R+YI++  +   G I +++A  D  MD G +   GVF + LL+D  P+LP GV  LP + ELFG   S+Y  + 
Subjt:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLITA
        +L  H  R+ I    +K +     +V+   K+  +  N RY +W SFKD  +   GGNYRN  ++ +I +
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLITA

TrEMBL top hitse value%identityAlignment
A0A0N7HUN0 Nuclear shuttle protein5.2e-1837.21Show/hide
Query:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK
        + L+ D+ P++P GV +LP F ELFG  E  YG   V      RY I  +W++ +  D  +V+    + R     RY +W +FKD   +  GGNY+NVSK
Subjt:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA   C  WVS   S C +Y    + + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

A5H153 Nuclear shuttle protein1.8e-1832.94Show/hide
Query:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT
        M + +N  I+ +++ P +      R R+YI++  +   G I +++A  D  MD G +   GVF + LL+D  P+LP GV  LP + ELFG   S+Y  + 
Subjt:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLITA
        +L  H  R+ I    +K +     +V+   K+  +  N RY +W SFKD  +   GGNYRN  ++ +I +
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLITA

H2DKP2 Nuclear shuttle protein5.2e-1837.21Show/hide
Query:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK
        + L+ D+ P++P GV +LP F ELFG  E  YG   V      RY I  +W++ +  D  +V+    + R     RY +W +FKD   +  GGNY+NVSK
Subjt:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA   C  WVS   S C +Y    + + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

Q58WG3 Nuclear shuttle protein3.0e-1837.21Show/hide
Query:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK
        ++++ DK P++P GV  LP F ELFG  ++ YG   +      RY +    ++ +  D   V+  V + R+ YN RY +W+SFKD      GGNY+NV+K
Subjt:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA  V Y WVS + S C +Y    + + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

Q9Q1R3 Nuclear shuttle protein2.3e-1837.98Show/hide
Query:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK
        + L+ DK P++P GV +LP F ELFG  E  YG   V      RY I  +W++ +  D  +V+    + R     RY +W +FKD   +  GGNY+NVSK
Subjt:  VSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA   C  WVS   S C +Y    + + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

SwissProt top hitse value%identityAlignment
P03564 Nuclear shuttle protein5.0e-1832.14Show/hide
Query:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLT
        V+ +N +IS +I  P        R R+YI+++++   G +KI   H+D +MD     I GVF+L ++ D+ P+L PTG   L  F+ELFG+   S+G L 
Subjt:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLI
        V      R+ I  V+++ I V++ S    ++ +  + NRR+  W++FKD       G Y N  ++ ++
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLI

P03565 Nuclear shuttle protein1.1e-1738.76Show/hide
Query:  SLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSK
        SL+ D  PYLP GV+ LP F ELFG   + Y  L +L     RY +    ++ +     +     +  ++   RRY IW SF D GDL+  GGNYRN+SK
Subjt:  SLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA  V Y +VSE    C  ++  E  + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

P14970 Nuclear shuttle protein6.5e-1838.76Show/hide
Query:  SLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSK
        SL+ D  PYLP GV+ LP F ELFG+  + Y  L +L     RY +    ++ +     +     +  ++   RRY IW SF D GDL+  GGNYRN+SK
Subjt:  SLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSK

Query:  NAFFVCYTWVSETTSICNLYLDTEMVFYG
        NA  V Y +VSE +  C  ++  E  + G
Subjt:  NAFFVCYTWVSETTSICNLYLDTEMVFYG

P27268 Nuclear shuttle protein9.4e-1730.3Show/hide
Query:  NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLTVLP
        +N ++S +I  P     +  R R+YI+++++   G +K+   H++  MD  V    GVF+L ++ D+ P+L P+G   LP F+ELFG+   S+G L ++P
Subjt:  NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLTVLP

Query:  RHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLI
            R+ I  V ++ I V++ ++   ++ V    +RR+  W  FKD       G Y N  ++ L+
Subjt:  RHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLI

Q9YPS8 Nuclear shuttle protein8.5e-1829.76Show/hide
Query:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT
        M +  N  +S ++Q P +      R R+YI++ ++ + G I I+ ++ D  M+ G   ++G+F L++L DK PYLP GV  LP F ELFG   ++Y  + 
Subjt:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLI
        +L     R+ +    +K +     ++   +K+      R+  +WT+FKD      GGNY+N  ++ ++
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGTATACAACAATCGCAGTATCAGCCGATATATACAATGTCCTTGTAAGGACCATGGTATCACCGTTCGACGTAGAAACTACATTCGTATTCGGCAGATCGGAAT
ATATGGCCGCATTAAGATAAGATTAGCTCATATTGATAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGCTATCTCTTCTTCGTGATAAGACCCCGT
ATCTGCCTACCGGTGTCGAATTACTACCAGATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGC
ATTGAACGTGTATGGCAGAAGAACATCTGTGTTGATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTT
CAAGGACACCGGAGATCTTCTAGGTGGCGGAAACTATAGAAACCCTCCACAATCTAAGCTAATCACTGCTCGGTCAGTTCACTGTTCCCGATTTCAGACACTGAATCCCC
AGGATTTATCGCCGCATCGTCTAGACGGTGAAGATGTCTGTATGGGTGTTCACCATCCACGCTTCTTCGTGAACACATGGAGCCAACCATGGATCGCGAAGCCCATGATT
CGCCAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGTATCTCTTCTTCGTGATAAGACCCCGTATCTACCTACCGGTGTCGAATTACTACCAGATTT
CAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGCATTGAACGTGTATGGCAGAAGAACATCTGTGTTG
ATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTTCAAGGACACCGGAGATCTTCTAGGTGGCGGAAAC
TATAGAAACGTATCAAAGAATGCCTTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATCGATATGCAATTTGTATCTTGACACTGAAATGGTCTTCTATGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGTATACAACAATCGCAGTATCAGCCGATATATACAATGTCCTTGTAAGGACCATGGTATCACCGTTCGACGTAGAAACTACATTCGTATTCGGCAGATCGGAAT
ATATGGCCGCATTAAGATAAGATTAGCTCATATTGATAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGCTATCTCTTCTTCGTGATAAGACCCCGT
ATCTGCCTACCGGTGTCGAATTACTACCAGATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGC
ATTGAACGTGTATGGCAGAAGAACATCTGTGTTGATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTT
CAAGGACACCGGAGATCTTCTAGGTGGCGGAAACTATAGAAACCCTCCACAATCTAAGCTAATCACTGCTCGGTCAGTTCACTGTTCCCGATTTCAGACACTGAATCCCC
AGGATTTATCGCCGCATCGTCTAGACGGTGAAGATGTCTGTATGGGTGTTCACCATCCACGCTTCTTCGTGAACACATGGAGCCAACCATGGATCGCGAAGCCCATGATT
CGCCAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGTATCTCTTCTTCGTGATAAGACCCCGTATCTACCTACCGGTGTCGAATTACTACCAGATTT
CAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGCATTGAACGTGTATGGCAGAAGAACATCTGTGTTG
ATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTTCAAGGACACCGGAGATCTTCTAGGTGGCGGAAAC
TATAGAAACGTATCAAAGAATGCCTTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATCGATATGCAATTTGTATCTTGACACTGAAATGGTCTTCTATGGGTGA
Protein sequenceShow/hide protein sequence
MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYC
IERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNPPQSKLITARSVHCSRFQTLNPQDLSPHRLDGEDVCMGVHHPRFFVNTWSQPWIAKPMI
RQRDGYWSSQYHWRVHVSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGN
YRNVSKNAFFVCYTWVSETTSICNLYLDTEMVFYG