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Lag0028281 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028281
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionNuclear shuttle protein
Genome locationchr8:17547085..17547621
RNA-Seq ExpressionLag0028281
SyntenyLag0028281
Gene Ontology termsGO:0051027 - DNA transport (biological process)
GO:0019028 - viral capsid (cellular component)
GO:0043657 - host cell (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0005198 - structural molecule activity (molecular function)
InterPro domainsIPR000263 - Geminivirus AR1/BR1 coat protein
IPR001530 - Geminivirus BR1 coat protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADW24247.1 NSP protein [Kudzu mosaic virus]2.4e-2336Show/hide
Query:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT
        M + +N  I+ +++ P +      R R+YI++  +   G I +++A  D  MD G +   GVF +SLL+D  P+LP GV  LP + ELFG   S+Y  + 
Subjt:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS
        +L  H  R+ I    +K +     +V+   K+  +  N RY +W SFKD  +   GGNYRN++KNA  V Y +VS
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS

AFQ60153.1 nuclear shuttle protein [Okra yellow mosaic Mexico virus - [Sida:Colima 2]]3.5e-2236.99Show/hide
Query:  NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPR
        +N +IS YI  P        R R+YI+++++   G +KI     D AMD  + N  GVF+L ++ D+ PYL T    L  F+ELFG++  S+G L+++P 
Subjt:  NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPR

Query:  HNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET
           RY I  V ++ + V++ +V   ++      NRRY  W SFKD       G Y N++KNA  V Y+WVS+T
Subjt:  HNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET

QDJ95901.1 coat protein [Cucumber chlorotic leaf virus]1.6e-2234.66Show/hide
Query:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTV
        V+ +N ++S +I  PC    +  R R+YI+++++   G +KI  AH D  +D     I GVF+L ++ D+ P++      L  F+E+FG+   S+G LTV
Subjt:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTV

Query:  LPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET
         P    RY +  V+++ + V+ K+    V+      NRRY +W++FKD       G Y N+SKNA  V Y W+S+T
Subjt:  LPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET

YP_001333682.1 NSP protein [Kudzu mosaic virus]2.7e-2235.43Show/hide
Query:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT
        M + +N  I+ +++ P +      R R+YI++  +   G I +++A  D  MD G +   GVF + LL+D  P+LP GV  LP + ELFG   S+Y  + 
Subjt:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS
        +L  H  R+ I    +K +     +V+   K+  +  N RY +W SFKD  +   GGNYRN++KNA  V Y +VS
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS

YP_001974409.1 BV1 [Tomato yellow vein streak virus]1.2e-2236.16Show/hide
Query:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLT
        V+ +N ++S +I  P        R R+YI+++++   G +KI   H D  MD  + NI GVF+L ++ D+ P+L PTG   L  F+ELFG+   S+G L 
Subjt:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET
        +      R+ I  VW+K I V++ S+   ++      N+RY  W++FKD       G Y N+SKNA  V Y W+S+T
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET

TrEMBL top hitse value%identityAlignment
A0A514TTR4 Nuclear shuttle protein7.6e-2334.66Show/hide
Query:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTV
        V+ +N ++S +I  PC    +  R R+YI+++++   G +KI  AH D  +D     I GVF+L ++ D+ P++      L  F+E+FG+   S+G LTV
Subjt:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTV

Query:  LPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET
         P    RY +  V+++ + V+ K+    V+      NRRY +W++FKD       G Y N+SKNA  V Y W+S+T
Subjt:  LPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET

A3RJ11 Nuclear shuttle protein5.8e-2336.16Show/hide
Query:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLT
        V+ +N ++S +I  P        R R+YI+++++   G +KI   H D  MD  + NI GVF+L ++ D+ P+L PTG   L  F+ELFG+   S+G L 
Subjt:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET
        +      R+ I  VW+K I V++ S+   ++      N+RY  W++FKD       G Y N+SKNA  V Y W+S+T
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET

A5H153 Nuclear shuttle protein1.3e-2235.43Show/hide
Query:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT
        M + +N  I+ +++ P +      R R+YI++  +   G I +++A  D  MD G +   GVF + LL+D  P+LP GV  LP + ELFG   S+Y  + 
Subjt:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS
        +L  H  R+ I    +K +     +V+   K+  +  N RY +W SFKD  +   GGNYRN++KNA  V Y +VS
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS

E9LZR0 Nuclear shuttle protein1.2e-2336Show/hide
Query:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT
        M + +N  I+ +++ P +      R R+YI++  +   G I +++A  D  MD G +   GVF +SLL+D  P+LP GV  LP + ELFG   S+Y  + 
Subjt:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS
        +L  H  R+ I    +K +     +V+   K+  +  N RY +W SFKD  +   GGNYRN++KNA  V Y +VS
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS

J7K1N0 Nuclear shuttle protein1.7e-2236.99Show/hide
Query:  NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPR
        +N +IS YI  P        R R+YI+++++   G +KI     D AMD  + N  GVF+L ++ D+ PYL T    L  F+ELFG++  S+G L+++P 
Subjt:  NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPR

Query:  HNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET
           RY I  V ++ + V++ +V   ++      NRRY  W SFKD       G Y N++KNA  V Y+WVS+T
Subjt:  HNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET

SwissProt top hitse value%identityAlignment
P03564 Nuclear shuttle protein8.6e-2435.23Show/hide
Query:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLT
        V+ +N +IS +I  P        R R+YI+++++   G +KI   H+D +MD     I GVF+L ++ D+ P+L PTG   L  F+ELFG+   S+G L 
Subjt:  VVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSE
        V      R+ I  V+++ I V++ S    ++ +  + NRR+  W++FKD       G Y N+SKNA  V Y W+S+
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSE

P03565 Nuclear shuttle protein2.8e-2235.47Show/hide
Query:  NRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRH
        N S + ++  P +      R R+YI+++ + + G I  +    D  M+     + GVF  SL+ D  PYLP GV+ LP F ELFG   + Y  L +L   
Subjt:  NRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRH

Query:  NGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSKNAFFVCYTWVSE
          RY +    ++ +     +     +  ++   RRY IW SF D GDL+  GGNYRN+SKNA  V Y +VSE
Subjt:  NGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSKNAFFVCYTWVSE

P14970 Nuclear shuttle protein2.1e-2235.47Show/hide
Query:  NRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRH
        N S + ++  P +      R R+YI+++ + + G I  +    D  M+    ++ GVF  SL+ D  PYLP GV+ LP F ELFG+  + Y  L +L   
Subjt:  NRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRH

Query:  NGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSKNAFFVCYTWVSE
          RY +    ++ +     +     +  ++   RRY IW SF D GDL+  GGNYRN+SKNA  V Y +VSE
Subjt:  NGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLL-GGGNYRNVSKNAFFVCYTWVSE

P27268 Nuclear shuttle protein1.2e-2232.76Show/hide
Query:  NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLTVLP
        +N ++S +I  P     +  R R+YI+++++   G +K+   H++  MD  V    GVF+L ++ D+ P+L P+G   LP F+ELFG+   S+G L ++P
Subjt:  NNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYL-PTGVELLPDFNELFGSLESSYGKLTVLP

Query:  RHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET
            R+ I  V ++ I V++ ++   ++ V    +RR+  W  FKD       G Y N++KNA  V Y W+S+T
Subjt:  RHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSET

Q9YPS8 Nuclear shuttle protein6.2e-2232Show/hide
Query:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT
        M +  N  +S ++Q P +      R R+YI++ ++ + G I I+ ++ D  M+ G   ++G+F L++L DK PYLP GV  LP F ELFG   ++Y  + 
Subjt:  MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLT

Query:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS
        +L     R+ +    +K +     ++   +K+      R+  +WT+FKD      GGNY+N+SKNA  + Y ++S
Subjt:  VLPRHNGRYCIERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGTATACAACAATCGCAGTATCAGCCGATATATACAATGTCCTTGTAAGGACCATGGTATCACCGTTCGACGTAGAAACTACATTCGTATTCGGCAGATCGGAAT
ATATGGCCGCATTAAGATAAGATTAGCTCATATTGATAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGCTATCTCTTCTTCGTGATAAGACCCCGT
ATCTGCCTACCGGTGTCGAATTACTACCAGATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGC
ATTGAACGTGTATGGCAGAAGAACATCTGTGTTGATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTT
CAAGGACACCGGAGATCTTCTAGGTGGCGGAAACTATAGAAACGTATCAAAGAATGCATTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCGTATACAACAATCGCAGTATCAGCCGATATATACAATGTCCTTGTAAGGACCATGGTATCACCGTTCGACGTAGAAACTACATTCGTATTCGGCAGATCGGAAT
ATATGGCCGCATTAAGATAAGATTAGCTCATATTGATAGCGCGATGGATACTGGAGTAGCCAATATCACTGGCGTGTTCACGCTATCTCTTCTTCGTGATAAGACCCCGT
ATCTGCCTACCGGTGTCGAATTACTACCAGATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACAATGGTCGTTACTGC
ATTGAACGTGTATGGCAGAAGAACATCTGTGTTGATCGGAAGTCTGTCGAGTTTACGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTT
CAAGGACACCGGAGATCTTCTAGGTGGCGGAAACTATAGAAACGTATCAAAGAATGCATTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATAG
Protein sequenceShow/hide protein sequence
MVVYNNRSISRYIQCPCKDHGITVRRRNYIRIRQIGIYGRIKIRLAHIDSAMDTGVANITGVFTLSLLRDKTPYLPTGVELLPDFNELFGSLESSYGKLTVLPRHNGRYC
IERVWQKNICVDRKSVEFTVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSETT