CuGenDBv2

Gene ID	Lag0028293
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RuvB-like helicase
Genome location	chr8:17860110..17865486
RNA-Seq Expression	Lag0028293
Synteny	Lag0028293
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process) GO:0006338 - chromatin remodeling (biological process) GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016573 - histone acetylation (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0048507 - meristem development (biological process) GO:1900150 - regulation of defense response to fungus (biological process) GO:0000812 - Swr1 complex (cellular component) GO:0031011 - Ino80 complex (cellular component) GO:0035267 - NuA4 histone acetyltransferase complex (cellular component) GO:0097255 - R2TP complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR027238 - RuvB-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136684.1 ruvB-like protein 1 [Cucumis sativus]

1.3e-14

77.97

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G + SL     +  PASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

XP_008443365.1 PREDICTED: ruvB-like protein 1 [Cucumis melo]

7.6e-15

79.66

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PASVVAKMNGRESICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

XP_022935386.1 ruvB-like protein 1 [Cucurbita moschata]

1.7e-14

77.97

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

XP_022983768.1 ruvB-like protein 1 [Cucurbita maxima]

1.7e-14

77.97

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

XP_038903107.1 ruvB-like protein 1 [Benincasa hispida]

1.7e-14

77.97

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHP0 RuvB-like helicase

6.3e-15

77.97

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G + SL     +  PASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

A0A1S3B7D5 RuvB-like helicase

3.7e-15

79.66

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PASVVAKMNGRESICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

A0A5D3DPM5 RuvB-like helicase

3.7e-15

79.66

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PASVVAKMNGRESICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

A0A6J1F5E4 RuvB-like helicase

8.2e-15

77.97

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

A0A6J1J8N2 RuvB-like helicase

8.2e-15

77.97

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

SwissProt top hits

e value

%identity

Alignment

P60122 RuvB-like 1

1.0e-06

43.1

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI
        G + +L     +  PA+++AK+NG++SI K  +EE+  L+ DAKSSA++L +QQ+KY+
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI

P60123 RuvB-like 1

1.0e-06

43.1

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI
        G + +L     +  PA+++AK+NG++SI K  +EE+  L+ DAKSSA++L +QQ+KY+
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI

Q9DE26 RuvB-like 1

1.0e-06

44.83

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI
        G + +L     +  PA+++AK+NG++SI K  +EE+  L+ DAKSSA++L EQQEK++
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI

Q9FMR9 RuvB-like protein 1

5.1e-14

66.1

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PAS+VAKMNGR++ICK D+EEV +LYLDAKSSA+LL EQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

Q9Y265 RuvB-like 1

1.0e-06

43.1

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI
        G + +L     +  PA+++AK+NG++SI K  +EE+  L+ DAKSSA++L +QQ+KY+
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI

Arabidopsis top hits

e value

%identity

Alignment

AT5G22330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

3.6e-15

66.1

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Query:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        G   SL     +  PAS+VAKMNGR++ICK D+EEV +LYLDAKSSA+LL EQQEKYIS
Subjt:  GVEKSLETCCSIAIPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

Sequences

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CDS sequence

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ATGTTTGACAAAGTCTTTTGTTTGTTTCGAGTTAATGGAGAAGCTATTGTCGAGTGGGTCAGAGATGTTATTCAAGATAAGGCTAATCTGGCGGTTTGTGAAGATTCTTT
TGGGAGATTATCATGTAGAGTGGTTGAGGTTGGAATCGATTGGGTCTTGAGGGACATCCTTTTGATGTGGGATGAGAGTTTGTTCAAGTCCATAAAGGCCCGAGGAGGTC
ATTGGGCCTTAGTGCGCCTTGAGCCTTTTGAAACACTGGGTAGGCTTGAAAAGAGCTCCCTAGTACTATTTCCAACTCCCAAGGAGCCTTTATCGCAGATAGTGGGCTTT
CTTTCCATTTTTCGATCAGAAGGTTTATTTTGGGAGAAGGGATGTTCGAGTTTGAGCTCGACTCGTTTGAAGGATTCTCGTGTTGCTCTTTCTTCCTCATCCTTTATTCC
CTTCTCCTCAGGGCCTGAGTTTTCTCCTCTCTTTGGAAGCGGTGCCCTTTGTTGTCTGCAGGAGGAGGATATTGATCATCTTTTGTGGGGTTGCCAGTTTGGAGTGTGGC
TCAAAAGGAATGCTAGAATTTTTAGAGGGGTGGAGAAATCTTTGGAGACATGCTGTTCAATTGCTATCCCTGCTAGCGTTGTGGCAAAAATGAATGGTCGAGAAAGCATA
TGCAAGGGAGATCTCGAAGAAGTTTGCACGCTCTATCTGGATGCGAAATCTTCGGCACGGCTTCTTCAAGAGCAGCAAGAAAAATACATCTCTTGA

mRNA sequence

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Protein sequence

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MFDKVFCLFRVNGEAIVEWVRDVIQDKANLAVCEDSFGRLSCRVVEVGIDWVLRDILLMWDESLFKSIKARGGHWALVRLEPFETLGRLEKSSLVLFPTPKEPLSQIVGF
LSIFRSEGLFWEKGCSSLSSTRLKDSRVALSSSSFIPFSSGPEFSPLFGSGALCCLQEEDIDHLLWGCQFGVWLKRNARIFRGVEKSLETCCSIAIPASVVAKMNGRESI
CKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

Lag0028293 (gene) of Sponge gourd (AG-4) v1 genome