; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028340 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028340
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionnucleolar protein 12
Genome locationchr8:18868730..18872192
RNA-Seq ExpressionLag0028340
SyntenyLag0028340
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596731.1 Inositol-tetrakisphosphate 1-kinase 5, partial [Cucurbita argyrosperma subsp. sororia]8.0e-1486.67Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP RKK KVGS+PIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
KAG7028265.1 nop12, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-1486.67Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP RKK KVGS+PIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
XP_022145377.1 nucleolar protein 12 [Momordica charantia]3.6e-1488.89Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP RKK KVGSAPIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
XP_022922379.1 nucleolar protein 12 [Cucurbita moschata]8.0e-1486.67Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP RKK KVGS+PIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
XP_023005336.1 nucleolar protein 12 [Cucurbita maxima]8.0e-1486.67Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP RKK KVGS+PIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
TrEMBL top hitse value%identityAlignment
A0A0A0L184 Uncharacterized protein4.3e-1382.22Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP  KK KVG+ PIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
A0A5A7UHL8 Nucleolar protein 124.3e-1382.22Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP  KK KVG+ PIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
A0A6J1CWE3 nucleolar protein 121.7e-1488.89Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP RKK KVGSAPIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
A0A6J1E378 nucleolar protein 123.9e-1486.67Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP RKK KVGS+PIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
A0A6J1KUP0 nucleolar protein 123.9e-1486.67Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
        M VFAGNHIRVDRACP RKK KVGS+PIYDP +TVFVGNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G46840.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.4e-1063.04Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFK-VGSAPIYDPNKTVFVGNLPFDVK
        M +  GNH+RVDRACP RKK K      +YDP +TVF+GNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFK-VGSAPIYDPNKTVFVGNLPFDVK
AT5G46840.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.4e-1063.04Show/hide
Query:  MVVFAGNHIRVDRACPLRKKFK-VGSAPIYDPNKTVFVGNLPFDVK
        M +  GNH+RVDRACP RKK K      +YDP +TVF+GNLPFDVK
Subjt:  MVVFAGNHIRVDRACPLRKKFK-VGSAPIYDPNKTVFVGNLPFDVK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGTTTGCAGGAAATCATATACGTGTTGACAGGGCATGCCCACTGCGTAAAAAGTTCAAAGTAGGAAGTGCTCCCATCTACGATCCTAACAAAACTGTTTTTGT
GGGTAACCTTCCATTTGATGTAAAGGTTGTTACAAATATATCAAAAATATTCCTCAAGGATACTGAAGCACCTGCTGCAATAAATTGGAAATATACTTACTGCAATAAAT
CGATTCCAAAGATTACCCCATCGGTACTATTTGAGTTTGGCTCTAGAGCTTGGAAAGGTGATGAAGATTACTACGAATCGGGTGATGCTGAGGAGGAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGTTTGCAGGAAATCATATACGTGTTGACAGGGCATGCCCACTGCGTAAAAAGTTCAAAGTAGGAAGTGCTCCCATCTACGATCCTAACAAAACTGTTTTTGT
GGGTAACCTTCCATTTGATGTAAAGGTTGTTACAAATATATCAAAAATATTCCTCAAGGATACTGAAGCACCTGCTGCAATAAATTGGAAATATACTTACTGCAATAAAT
CGATTCCAAAGATTACCCCATCGGTACTATTTGAGTTTGGCTCTAGAGCTTGGAAAGGTGATGAAGATTACTACGAATCGGGTGATGCTGAGGAGGAGGTCTGA
Protein sequenceShow/hide protein sequence
MVVFAGNHIRVDRACPLRKKFKVGSAPIYDPNKTVFVGNLPFDVKVVTNISKIFLKDTEAPAAINWKYTYCNKSIPKITPSVLFEFGSRAWKGDEDYYESGDAEEEV