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Lag0028341 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028341
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr8:18896054..18896566
RNA-Seq ExpressionLag0028341
SyntenyLag0028341
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]2.1e-2446.71Show/hide
Query:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS
        RG+ +S+SSKG  P+SSS S P+PMSA QY MDLGFT V R R+R +S+ I    ES T PP PS +L  PS             V Q RP  SP   SS
Subjt:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS

Query:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP
        +++ S+ PTT+  A+   KRF+PRPEIK+YF+KS+ + +PI+EPE+   ++ E++  I+P+ F F+P
Subjt:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]9.7e-2244.91Show/hide
Query:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS
        RG+ +S+SSKG   +SSS S P+PMSADQYAMDLGFT V R R+R + + I    ES T PP PSA+L  P              V Q +P  SP   SS
Subjt:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS

Query:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP
        +++ S+ PTT+  A+ P KRF+PRP+IK YF+KS+ + +P +E E+   ++ E +  I+P+ F F+P
Subjt:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.0e-2245.78Show/hide
Query:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS
        RG+ +S+SSKG  P SSS S P+P+SADQYAMDLGFT V R  +RS  + I    ES T PP PS +L  PS           + V Q RP  SP   SS
Subjt:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS

Query:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFI
        +++ S+ PTT+  A+ P KRF+PRPEIK+YF+K + + +PI+E E+   +  E +  I+P+ F F+
Subjt:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFI

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]1.2e-1944.06Show/hide
Query:  MSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSSSQQGSSIPTTFVDAIQPSKRFIPR
        MSADQYAMDLGFT V R R+RS+S++I  S ES T PP PSA+L  P                Q RP  SP   SS+++ S+ PTT+   + P KRF+PR
Subjt:  MSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSSSQQGSSIPTTFVDAIQPSKRFIPR

Query:  PEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP
        PEIK+YF+KS+ + + I+EPE+   ++ + +  I+   F  +P
Subjt:  PEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]8.8e-2345.45Show/hide
Query:  KASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSSSQ
        +A+S+SS+G  P+SSS S P+PMSADQYAMDLGFT V R R RS+ +QI    +S T PP  SA+L  PS           + V Q RP  SP+   S++
Subjt:  KASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSSSQ

Query:  QGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP
        + S+ PTT+   I P KRF+PR EIK+YF+K + + + I+EPE+   ++ E +  I+P  F F+P
Subjt:  QGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein9.5e-2345.78Show/hide
Query:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS
        RG+ +S+SSKG  P SSS S P+P+SADQYAMDLGFT V R  +RS  + I    ES T PP PS +L  PS           + V Q RP  SP   SS
Subjt:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS

Query:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFI
        +++ S+ PTT+  A+ P KRF+PRPEIK+YF+K + + +PI+E E+   +  E +  I+P+ F F+
Subjt:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFI

A0A5D3BM67 Uncharacterized protein5.7e-2044.06Show/hide
Query:  MSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSSSQQGSSIPTTFVDAIQPSKRFIPR
        MSADQYAMDLGFT V R R+RS+S++I  S ES T PP PSA+L  P                Q RP  SP   SS+++ S+ PTT+   + P KRF+PR
Subjt:  MSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSSSQQGSSIPTTFVDAIQPSKRFIPR

Query:  PEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP
        PEIK+YF+KS+ + + I+EPE+   ++ + +  I+   F  +P
Subjt:  PEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP

A0A5D3CKX1 Uncharacterized protein2.9e-1948.59Show/hide
Query:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS
        RG+ +S+SSKG  P+SSS S P+PMSADQY MDLGFT V R R+RS+S++     ES T PP P A+L  PS             V Q RP  SP   SS
Subjt:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS

Query:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIV
        +++ S+ PTT+  A+ P KRF+PRP+IK+YF+K + + +PI+
Subjt:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIV

A0A5D3E4J4 Uncharacterized protein4.7e-2244.91Show/hide
Query:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS
        RG+ +S+SSKG   +SSS S P+PMSADQYAMDLGFT V R R+R + + I    ES T PP PSA+L  P              V Q +P  SP   SS
Subjt:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS

Query:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP
        +++ S+ PTT+  A+ P KRF+PRP+IK YF+KS+ + +P +E E+   ++ E +  I+P+ F F+P
Subjt:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP

E5GCE6 Uncharacterized protein1.0e-2446.71Show/hide
Query:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS
        RG+ +S+SSKG  P+SSS S P+PMSA QY MDLGFT V R R+R +S+ I    ES T PP PS +L  PS             V Q RP  SP   SS
Subjt:  RGKASSSSSKGKSPASSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSS

Query:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP
        +++ S+ PTT+  A+   KRF+PRPEIK+YF+KS+ + +PI+EPE+   ++ E++  I+P+ F F+P
Subjt:  SQQGSSIPTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGATCAGCGAGGCAAAGCCTCTTCATCTTCTTCAAAGGGCAAAAGCCCAGCTTCATCTTCAAAATCTCCAGCTCCTATGAGCGCGGATCAATATGCCATGGATCT
TGGTTTCACTCCTGTGAACCGTCCAAGAACCAGAAGTGCATCTCTTCAAATCCGTGATTCAATAGAGTCTTTAACTCGACCACCGAGCCCATCCGCCTCTCTTGCATGGC
CTTCTGCCGTCCCTTCAATGAGACCTACTATCTCTCCAACCTCTGTAACTCAAACGAGACCTACTGTCTCCCCAATTACCCAATCTTCTTCTCAACAGGGATCTTCTATC
CCTACAACTTTTGTGGATGCTATTCAACCTTCCAAAAGGTTTATTCCAAGACCAGAGATCAAAAATTACTTTGAAAAATCTCTTCAATTAGCAGAACCAATAGTTGAACC
CGAATTCGACGGGTCTTCAATTATTGAAATTATTCAAAATATTTATCCTCAAGGGTTTTATTTCATTCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGATCAGCGAGGCAAAGCCTCTTCATCTTCTTCAAAGGGCAAAAGCCCAGCTTCATCTTCAAAATCTCCAGCTCCTATGAGCGCGGATCAATATGCCATGGATCT
TGGTTTCACTCCTGTGAACCGTCCAAGAACCAGAAGTGCATCTCTTCAAATCCGTGATTCAATAGAGTCTTTAACTCGACCACCGAGCCCATCCGCCTCTCTTGCATGGC
CTTCTGCCGTCCCTTCAATGAGACCTACTATCTCTCCAACCTCTGTAACTCAAACGAGACCTACTGTCTCCCCAATTACCCAATCTTCTTCTCAACAGGGATCTTCTATC
CCTACAACTTTTGTGGATGCTATTCAACCTTCCAAAAGGTTTATTCCAAGACCAGAGATCAAAAATTACTTTGAAAAATCTCTTCAATTAGCAGAACCAATAGTTGAACC
CGAATTCGACGGGTCTTCAATTATTGAAATTATTCAAAATATTTATCCTCAAGGGTTTTATTTCATTCCGTAA
Protein sequenceShow/hide protein sequence
MSDQRGKASSSSSKGKSPASSSKSPAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSIESLTRPPSPSASLAWPSAVPSMRPTISPTSVTQTRPTVSPITQSSSQQGSSI
PTTFVDAIQPSKRFIPRPEIKNYFEKSLQLAEPIVEPEFDGSSIIEIIQNIYPQGFYFIP