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Lag0028342 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028342
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr8:18961850..18962164
RNA-Seq ExpressionLag0028342
SyntenyLag0028342
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]9.8e-3366.99Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHSSARNVIERAFG LK  WAILRG+SYYPV+IQ K ITACCLLHNLI REM  + +FE  H G+ DS+ MN ++I FVE+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
KAA0049607.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-3164.08Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHSS RN+IERAFG LK WWAILRG+SYY V+IQ K IT CCLLHNLI REMG + +FE  H  + DS+ MN ++I FVE+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]5.0e-2962.14Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHS ARNVIERAFG L   W IL+G+SYY V+IQ K ITACCLLHNLI REMG + +F+  H G+ DS+ MN ++I FVE+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-3366.02Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHSSARNVIERAFG LKGWWAILRG+SYYPV+IQ K IT CCLLH LI RE+G   +FE  H G+ DS+ MN ++I F+E+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]9.8e-3366.99Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHSSARNVIERAFG LK  WAILRG+SYYPV+IQ K ITACCLLHNLI REM  + +FE  H G+ DS+ MN ++I FVE+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
TrEMBL top hitse value%identityAlignment
A0A5A7U3R2 Retrotransposon protein4.7e-3366.99Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHSSARNVIERAFG LK  WAILRG+SYYPV+IQ K ITACCLLHNLI REM  + +FE  H G+ DS+ MN ++I FVE+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
A0A5A7U5I3 Retrotransposon protein5.2e-3264.08Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHSS RN+IERAFG LK WWAILRG+SYY V+IQ K IT CCLLHNLI REMG + +FE  H  + DS+ MN ++I FVE+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
A0A5A7VG45 Retrotransposon protein2.4e-2962.14Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHS ARNVIERAFG L   W IL+G+SYY V+IQ K ITACCLLHNLI REMG + +F+  H G+ DS+ MN ++I FVE+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
A0A5D3C542 Retrotransposon protein2.1e-3366.02Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHSSARNVIERAFG LKGWWAILRG+SYYPV+IQ K IT CCLLH LI RE+G   +FE  H G+ DS+ MN ++I F+E+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
A0A5D3C7X6 Retrotransposon protein4.7e-3366.99Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE
        MRHSSARNVIERAFG LK  WAILRG+SYYPV+IQ K ITACCLLHNLI REM  + +FE  H G+ DS+ MN ++I FVE+T+ W+EW D++A QMF +
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAE

Query:  WNN
        WNN
Subjt:  WNN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G19120.1 PIF / Ping-Pong family of plant transposases7.8e-0447.62Show/hide
Query:  RNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNL
        R+V+  A G+LK  W IL+  +   VN   +TI ACC+LHNL
Subjt:  RNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNL
AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)6.8e-0831.9Show/hide
Query:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPS---FETTHPGD---QDSNGMNTDHITFVESTSTWSE------
        +RH S RNVIER FG+ K  +AI +    +    Q   +  C  LHN + +E   D +    E  + GD    + N MNT+ I   E      +      
Subjt:  MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPS---FETTHPGD---QDSNGMNTDHITFVESTSTWSE------

Query:  -WWDSMAEQMFAEWNN
         W  SMAE M+ +  N
Subjt:  -WWDSMAEQMFAEWNN
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.4e-0539.66Show/hide
Query:  RHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSF
        RH      I R FG LK  + IL     YP+  QVK + A C LHN +  E   D  F
Subjt:  RHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACATTCGTCTGCACGAAATGTAATAGAAAGAGCGTTTGGTGTTTTGAAGGGTTGGTGGGCTATTCTACGGGGGAAGTCGTATTATCCTGTCAACATACAGGTAAA
AACGATAACAGCATGTTGCCTCCTCCACAACCTGATCATTCGTGAAATGGGCCACGACCCGAGTTTCGAGACTACACATCCAGGAGACCAAGATTCAAATGGAATGAATA
CTGATCACATCACGTTTGTTGAGTCCACATCAACGTGGAGTGAATGGTGGGATTCTATGGCTGAGCAGATGTTCGCGGAATGGAACAACAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGACATTCGTCTGCACGAAATGTAATAGAAAGAGCGTTTGGTGTTTTGAAGGGTTGGTGGGCTATTCTACGGGGGAAGTCGTATTATCCTGTCAACATACAGGTAAA
AACGATAACAGCATGTTGCCTCCTCCACAACCTGATCATTCGTGAAATGGGCCACGACCCGAGTTTCGAGACTACACATCCAGGAGACCAAGATTCAAATGGAATGAATA
CTGATCACATCACGTTTGTTGAGTCCACATCAACGTGGAGTGAATGGTGGGATTCTATGGCTGAGCAGATGTTCGCGGAATGGAACAACAGTTGA
Protein sequenceShow/hide protein sequence
MRHSSARNVIERAFGVLKGWWAILRGKSYYPVNIQVKTITACCLLHNLIIREMGHDPSFETTHPGDQDSNGMNTDHITFVESTSTWSEWWDSMAEQMFAEWNNS