CuGenDBv2

Gene ID	Lag0028343
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon protein
Genome location	chr8:18962262..18963485
RNA-Seq Expression	Lag0028343
Synteny	Lag0028343
Gene Ontology terms	NA
InterPro domains	IPR009027 - Ribosomal protein L9/RNase H1, N-terminal IPR011320 - Ribonuclease H1, N-terminal IPR037056 - Ribonuclease H1, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036995.1 retrotransposon protein [Cucumis melo var. makuwa]

8.2e-21

37.99

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Query:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNA
        ++ Q L+ +LT+    Q Q ++  L  L        ++P   R++IRQL +FR+IHE DL C E+TRMD+R F ILC L  R   G         +    
Subjt:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNA

Query:  FQCCVGCDPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV
            V         P   T     D   ++ +NCLGALDG +I VNVSA DRP +RT KGEIATN+  V     +F++V
Subjt:  FQCCVGCDPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV

KAA0047510.1 retrotransposon protein [Cucumis melo var. makuwa]

2.6e-19

33.8

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Query:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQA----------------
        ++ QEL +I+    A+Q Q ++ +L +L+      +  P   R++IRQL +FR+IH  DL C E+TRMD+R F ILC L    A                
Subjt:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQA----------------

Query:  ---VGSHKLRR--------RGGD--GCNAFQCCVGC-----DPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNM
           + +H ++         R G+   C+     +       +      PV N      D   RW +NCLGALDG +I VNV A+DR RYRT KGE+ATN+
Subjt:  ---VGSHKLRR--------RGGD--GCNAFQCCVGC-----DPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNM

Query:  FAVLSQNDEFIFV
          V  +  +F++V
Subjt:  FAVLSQNDEFIFV

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-19

34.6

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Query:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQA----------------
        ++ Q LI +LT   + Q Q I+  L +L         +PP  R++IR+L +FR+IHE DL C ++TRMD+RTF ILC L    A                
Subjt:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQA----------------

Query:  ---VGSHKLRR--------RGGDGCNAFQCCVGCDPPTAY-----NPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFA
           V +H ++         R G+  +     V       Y      PV  T +   D   +  +NCLGALDG +I VNV A DRP +RT KGEI TN+  
Subjt:  ---VGSHKLRR--------RGGDGCNAFQCCVGCDPPTAY-----NPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFA

Query:  VLSQNDEFIFV
        V     +F++V
Subjt:  VLSQNDEFIFV

KAA0063060.1 retrotransposon protein [Cucumis melo var. makuwa]

2.6e-19

41.38

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Query:  SPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPT---AYNPVENTGARDEDLHGRWMKNC
        +PP  R++IR+L +FR+IHE DL C ++T MD+RTF ILC L    A  S        +    F   +  D         PV  T +   D   +  +NC
Subjt:  SPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPT---AYNPVENTGARDEDLHGRWMKNC

Query:  LGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV
        LGALDG +I VNV A DRP +RT KGEIATN+  V    ++F++V
Subjt:  LGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV

KAA0067159.1 retrotransposon protein [Cucumis melo var. makuwa]

9.0e-20

40.97

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Query:  SPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPTAYNPVENTGARDEDLHGRW--MKNCL
        +PP  R++IR+L +FR+IHE DL C ++TRMD+RTF ILC L    A  S        +    F   +  D     +    +   D+    RW   +NCL
Subjt:  SPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPTAYNPVENTGARDEDLHGRW--MKNCL

Query:  GALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV
        GALDG +I VNV A DRP +RT KGE+ATN+  V     +F++V
Subjt:  GALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T686 Retrotransposon protein

4.0e-21

37.99

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Query:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNA
        ++ Q L+ +LT+    Q Q ++  L  L        ++P   R++IRQL +FR+IHE DL C E+TRMD+R F ILC L  R   G         +    
Subjt:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNA

Query:  FQCCVGCDPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV
            V         P   T     D   ++ +NCLGALDG +I VNVSA DRP +RT KGEIATN+  V     +F++V
Subjt:  FQCCVGCDPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV

A0A5A7TWH8 Retrotransposon protein

1.3e-19

33.8

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Query:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQA----------------
        ++ QEL +I+    A+Q Q ++ +L +L+      +  P   R++IRQL +FR+IH  DL C E+TRMD+R F ILC L    A                
Subjt:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQA----------------

Query:  ---VGSHKLRR--------RGGD--GCNAFQCCVGC-----DPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNM
           + +H ++         R G+   C+     +       +      PV N      D   RW +NCLGALDG +I VNV A+DR RYRT KGE+ATN+
Subjt:  ---VGSHKLRR--------RGGD--GCNAFQCCVGC-----DPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNM

Query:  FAVLSQNDEFIFV
          V  +  +F++V
Subjt:  FAVLSQNDEFIFV

A0A5A7UUT3 Retrotransposon protein

5.7e-20

34.6

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Query:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQA----------------
        ++ Q LI +LT   + Q Q I+  L +L         +PP  R++IR+L +FR+IHE DL C ++TRMD+RTF ILC L    A                
Subjt:  IETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQA----------------

Query:  ---VGSHKLRR--------RGGDGCNAFQCCVGCDPPTAY-----NPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFA
           V +H ++         R G+  +     V       Y      PV  T +   D   +  +NCLGALDG +I VNV A DRP +RT KGEI TN+  
Subjt:  ---VGSHKLRR--------RGGDGCNAFQCCVGCDPPTAY-----NPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFA

Query:  VLSQNDEFIFV
        V     +F++V
Subjt:  VLSQNDEFIFV

A0A5A7V738 Retrotransposon protein

1.3e-19

41.38

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Query:  SPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPT---AYNPVENTGARDEDLHGRWMKNC
        +PP  R++IR+L +FR+IHE DL C ++T MD+RTF ILC L    A  S        +    F   +  D         PV  T +   D   +  +NC
Subjt:  SPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPT---AYNPVENTGARDEDLHGRWMKNC

Query:  LGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV
        LGALDG +I VNV A DRP +RT KGEIATN+  V    ++F++V
Subjt:  LGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV

A0A5A7VPL4 Retrotransposon protein

4.4e-20

40.97

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Query:  SPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPTAYNPVENTGARDEDLHGRW--MKNCL
        +PP  R++IR+L +FR+IHE DL C ++TRMD+RTF ILC L    A  S        +    F   +  D     +    +   D+    RW   +NCL
Subjt:  SPPHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPTAYNPVENTGARDEDLHGRW--MKNCL

Query:  GALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV
        GALDG +I VNV A DRP +RT KGE+ATN+  V     +F++V
Subjt:  GALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28950.1 unknown protein

1.8e-05

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Query:  WMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV
        + K+C+GA+D  HI   VS    P +R  KG+I+ NM A  + + EF++V
Subjt:  WMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

7.4e-04

20.75

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Query:  FRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPTA-------------------------------YNPVENTG
        +++++  +  C EN RMD+  F  LC L + + +  H  R +       F   +G +  T                                + P  N+ 
Subjt:  FRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPTA-------------------------------YNPVENTG

Query:  ARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV
          + D    + K+C+G +D  HI V V   ++  +R   G +  N+ A  S +  F +V
Subjt:  ARDEDLHGRWMKNCLGALDGMHIMVNVSAADRPRYRTSKGEIATNMFAVLSQNDEFIFV

Sequences

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CDS sequence

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ATGCCTGGTGTATATATGACATGGTACGACTGTTCAAGCCAAGTAAACGACTTTAACGGGGCAGTATATCAATCATATGACACGCTTGATGAAGCTGAGGATGCTTACAA
CACGTTCGTAGGTGGTGTAGAGGACCGTTTCATAGATCGAGGACAAGTACTCCTAGACCGAAGTAGGACTTTGAAAATCGTACAAGCCATGGATGATCTTAAAATTGAAA
CCCAGGAGTTGATTGCAATTCTGACTATCATTTGTGCCACCCAGTACCAGTTCATAGTAGCTGTACTGGGAATCTTACAAACCATCCAGTCAACCAGTTCTCGATCTCCT
CCACACGTACGAAATCAGATCAGACAACTTAACTTCTTCCGCCTGATTCATGAAGATGATCTTGCATGTTGCGAAAATACACGAATGGATCAGAGAACTTTCACAATATT
ATGTTCCTTGTACGAACGACAGGCGGTTGGAAGCCACAAACTACGTCGACGTGGAGGAGATGGTTGCAATGCATTTCAATGCTGTGTTGGATGCGATCCTCCGACTGCAT
ACAACCCTGTTGAAAACACCGGAGCCCGTGACGAGGACTTGCACGGACGATGGATGAAGAACTGTTTAGGTGCGTTAGATGGGATGCACATCATGGTGAACGTGAGTGCA
GCCGATCGACCCAGGTACCGAACAAGTAAGGGCGAGATCGCGACAAACATGTTTGCCGTCCTTTCGCAGAACGACGAGTTCATATTCGTCTTTCTGGTTGGGAAGGCTCG
ACCTCCGACTCAAGGGTTCTTCACGATGCAGTGTCCCGTCCGACAGGGCTTAAGGTTCCGAGGGGATATTACTACCTGTGCGACGCTGGTTATCTAA

mRNA sequence

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Protein sequence

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MPGVYMTWYDCSSQVNDFNGAVYQSYDTLDEAEDAYNTFVGGVEDRFIDRGQVLLDRSRTLKIVQAMDDLKIETQELIAILTIICATQYQFIVAVLGILQTIQSTSSRSP
PHVRNQIRQLNFFRLIHEDDLACCENTRMDQRTFTILCSLYERQAVGSHKLRRRGGDGCNAFQCCVGCDPPTAYNPVENTGARDEDLHGRWMKNCLGALDGMHIMVNVSA
ADRPRYRTSKGEIATNMFAVLSQNDEFIFVFLVGKARPPTQGFFTMQCPVRQGLRFRGDITTCATLVI

Lag0028343 (gene) of Sponge gourd (AG-4) v1 genome