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Lag0028349 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028349
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGRF-type domain-containing protein
Genome locationchr8:19188144..19188472
RNA-Seq ExpressionLag0028349
SyntenyLag0028349
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6478655.1 hypothetical protein ZIOFF_062099 [Zingiber officinale]7.0e-0546.55Show/hide
Query:  GSSEFVRVDNSETNNPSY-------CQCGLRARLITSWTKRNPGRRFYGCPSYKILDC
        GSS         TN+  Y       C CGLRA L TSWT+ NPGRRF+ CP Y+   C
Subjt:  GSSEFVRVDNSETNNPSY-------CQCGLRARLITSWTKRNPGRRFYGCPSYKILDC

PIN21218.1 DNA topoisomerase [Handroanthus impetiginosus]5.4e-0557.14Show/hide
Query:  SETNNPSYCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCS
        S     +YC CG RA L TSWTK NPGRRF+ C SYK   C+
Subjt:  SETNNPSYCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCS

PWA46535.1 zinc finger, GRF-type [Artemisia annua]4.4e-0749.09Show/hide
Query:  YCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQ
        YC CG R  +ITSWT  NPGRRFYGCP + I+D     +CR   R V  + G+++
Subjt:  YCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQ

PWA57906.1 zinc finger, GRF-type [Artemisia annua]3.2e-0540.98Show/hide
Query:  CQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQKYSNTTK
        C CG +A + TSWT RNPGRRFY CPSY  +  +   +C    R V  ++G+++  +   K
Subjt:  CQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQKYSNTTK

XP_028101709.1 uncharacterized protein LOC114301019 [Camellia sinensis]9.2e-0578.57Show/hide
Query:  CQCGLRARLITSWTKRNPGRRFYGCPSY
        CQCGLRAR+ TSWTK NP RRF GCP Y
Subjt:  CQCGLRARLITSWTKRNPGRRFYGCPSY

TrEMBL top hitse value%identityAlignment
A0A2G9HUL6 DNA topoisomerase2.6e-0557.14Show/hide
Query:  SETNNPSYCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCS
        S     +YC CG RA L TSWTK NPGRRF+ C SYK   C+
Subjt:  SETNNPSYCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCS

A0A2U1LC06 Zinc finger, GRF-type2.1e-0749.09Show/hide
Query:  YCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQ
        YC CG R  +ITSWT  NPGRRFYGCP + I+D     +CR   R V  + G+++
Subjt:  YCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQ

A0A2U1M9L4 Zinc finger, GRF-type1.5e-0540.98Show/hide
Query:  CQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQKYSNTTK
        C CG +A + TSWT RNPGRRFY CPSY  +  +   +C    R V  ++G+++  +   K
Subjt:  CQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQKYSNTTK

A0A5N6PW28 GRF-type domain-containing protein9.9e-0566.67Show/hide
Query:  NPSYCQCGLRARLITSWTKRNPGRRFYGCP
        N  +C+CG  A ++TSWT RNPGRRFYGCP
Subjt:  NPSYCQCGLRARLITSWTKRNPGRRFYGCP

A0A6P5ETD2 uncharacterized protein LOC1097090717.6e-0541.18Show/hide
Query:  SEFVRVDNSETNNPSYCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSS
        S F    +    +   C CGL   + TSWT+ NPGRRFYGCP Y++ + ++
Subjt:  SEFVRVDNSETNNPSYCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGTTCGATGGAAGTTCAGAGTTCGTAAGAGTCGATAATAGTGAAACTAACAACCCAAGCTACTGTCAATGTGGGTTACGAGCTCGATTAATAACTTCATGGAC
AAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTAGTTACAAGATACTCGACTGCTCGTCTTCTCTGTTGTGTAGAGGAATGGTTCGGGATGTGGGTTTTTTGATTG
GTGTGATCCAGAAGTATTCGAACACAACAAAGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGTTCGATGGAAGTTCAGAGTTCGTAAGAGTCGATAATAGTGAAACTAACAACCCAAGCTACTGTCAATGTGGGTTACGAGCTCGATTAATAACTTCATGGAC
AAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTAGTTACAAGATACTCGACTGCTCGTCTTCTCTGTTGTGTAGAGGAATGGTTCGGGATGTGGGTTTTTTGATTG
GTGTGATCCAGAAGTATTCGAACACAACAAAGAATTGA
Protein sequenceShow/hide protein sequence
MDKFDGSSEFVRVDNSETNNPSYCQCGLRARLITSWTKRNPGRRFYGCPSYKILDCSSSLLCRGMVRDVGFLIGVIQKYSNTTKN