; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028354 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028354
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationchr8:19252941..19253474
RNA-Seq ExpressionLag0028354
SyntenyLag0028354
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058889.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.9e-0445.71Show/hide
Query:  MTQDSDSSGEDENFYYIQQDQQ---PRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE
        + QD+  S +++N   I Q+ Q     +P  Q+D+       E RMKVDLP FNGRM+VE F DW+KNVE
Subjt:  MTQDSDSSGEDENFYYIQQDQQ---PRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE

XP_022138327.1 uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]1.9e-0430.06Show/hide
Query:  RLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDFMTQD
        RL L+E S+ +++ +V  I   +  L +++  +    + L       +  N   NQ R     RN  + RN          N E +           +QD
Subjt:  RLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDFMTQD

Query:  SDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE
        SD+S  DE F      Q PR  R +   +     ++++MK+DLP FNG+M+VE F D VKNVE
Subjt:  SDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE

XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]1.9e-0430.06Show/hide
Query:  RLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDFMTQD
        RL L+E S+ +++ +V  I   +  L +++  +    + L       +  N   NQ R     RN  + RN          N E +           +QD
Subjt:  RLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDFMTQD

Query:  SDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE
        SD+S  DE F      Q PR  R +   +     ++++MK+DLP FNG+M+VE F D VKNVE
Subjt:  SDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]3.2e-0740.5Show/hide
Query:  RIAINPRNPQENQDRLVDGARNIQENRNE-VGVHPRRLANAEFERIPKTFMNDFMTQDSDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVD
        R  +  R  QE Q+R ++   N +  RN+ + +H  RL       +P  F++     DSDSS ED N   I Q+ Q R+      R    E  E RMKVD
Subjt:  RIAINPRNPQENQDRLVDGARNIQENRNE-VGVHPRRLANAEFERIPKTFMNDFMTQDSDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVD

Query:  LPDFNGRMEVEIFFDWVKNVE
        LP FNGR++VE F DW+KNVE
Subjt:  LPDFNGRMEVEIFFDWVKNVE

TrEMBL top hitse value%identityAlignment
A0A5D3DJC1 Transposon Ty3-G Gag-Pol polyprotein9.3e-0545.71Show/hide
Query:  MTQDSDSSGEDENFYYIQQDQQ---PRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE
        + QD+  S +++N   I Q+ Q     +P  Q+D+       E RMKVDLP FNGRM+VE F DW+KNVE
Subjt:  MTQDSDSSGEDENFYYIQQDQQ---PRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X19.3e-0530.06Show/hide
Query:  RLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDFMTQD
        RL L+E S+ +++ +V  I   +  L +++  +    + L       +  N   NQ R     RN  + RN          N E +           +QD
Subjt:  RLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDFMTQD

Query:  SDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE
        SD+S  DE F      Q PR  R +   +     ++++MK+DLP FNG+M+VE F D VKNVE
Subjt:  SDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X29.3e-0530.06Show/hide
Query:  RLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDFMTQD
        RL L+E S+ +++ +V  I   +  L +++  +    + L       +  N   NQ R     RN  + RN          N E +           +QD
Subjt:  RLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDFMTQD

Query:  SDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE
        SD+S  DE F      Q PR  R +   +     ++++MK+DLP FNG+M+VE F D VKNVE
Subjt:  SDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCGGAACCTTCAAACGTCCAGAGAAACTATGATCGACGCTTGCAGTTGGTTGAAACTTCGGTAGATGACATCAAGAAGAGTGTGACTGACATTCAACAGTCCAT
TAGGCAACTTACACAAGAGATGAGTACACTAGCAGCAAATCATCAAAACTTGGGAGACAAAAGAATAGCAATAAACCCAAGAAATCCCCAAGAAAACCAAGACAGATTGG
TGGATGGAGCAAGAAACATCCAAGAAAACAGAAATGAAGTTGGTGTCCATCCAAGAAGACTAGCCAATGCTGAATTTGAAAGAATCCCTAAAACATTCATGAACGATTTT
ATGACACAAGACTCGGATTCATCGGGTGAAGATGAAAATTTTTATTACATTCAGCAAGATCAACAACCAAGAATTCCAAGAAGGCAACAAGATAGACAGCTTGCTCATGA
ATATTCTGAGTACAGAATGAAGGTAGATCTTCCAGACTTTAATGGGAGGATGGAGGTGGAAATTTTTTTTGATTGGGTGAAGAATGTAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCGGAACCTTCAAACGTCCAGAGAAACTATGATCGACGCTTGCAGTTGGTTGAAACTTCGGTAGATGACATCAAGAAGAGTGTGACTGACATTCAACAGTCCAT
TAGGCAACTTACACAAGAGATGAGTACACTAGCAGCAAATCATCAAAACTTGGGAGACAAAAGAATAGCAATAAACCCAAGAAATCCCCAAGAAAACCAAGACAGATTGG
TGGATGGAGCAAGAAACATCCAAGAAAACAGAAATGAAGTTGGTGTCCATCCAAGAAGACTAGCCAATGCTGAATTTGAAAGAATCCCTAAAACATTCATGAACGATTTT
ATGACACAAGACTCGGATTCATCGGGTGAAGATGAAAATTTTTATTACATTCAGCAAGATCAACAACCAAGAATTCCAAGAAGGCAACAAGATAGACAGCTTGCTCATGA
ATATTCTGAGTACAGAATGAAGGTAGATCTTCCAGACTTTAATGGGAGGATGGAGGTGGAAATTTTTTTTGATTGGGTGAAGAATGTAGAATGA
Protein sequenceShow/hide protein sequence
MEAEPSNVQRNYDRRLQLVETSVDDIKKSVTDIQQSIRQLTQEMSTLAANHQNLGDKRIAINPRNPQENQDRLVDGARNIQENRNEVGVHPRRLANAEFERIPKTFMNDF
MTQDSDSSGEDENFYYIQQDQQPRIPRRQQDRQLAHEYSEYRMKVDLPDFNGRMEVEIFFDWVKNVE