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Lag0028359 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028359
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr8:19422218..19425286
RNA-Seq ExpressionLag0028359
SyntenyLag0028359
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]8.3e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
        MRDCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]6.0e-0971.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-1170.21Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
        +RDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein4.0e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
        MRDCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
A0A5A7U202 Reverse transcriptase1.0e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
A0A5A7U2P4 Integrase catalytic domain-containing protein2.9e-0971.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
A0A5D3C3J6 Gag/pol protein1.8e-1170.21Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
        +RDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMR
A0A5D3CBX3 Reverse transcriptase1.0e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAATGTAGTCTTAC
AAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTCCATTAGGTCCCACCGGTAGCTCATTCAGGGCGTTGAGCGAAAACAAGGATTGCAAGTTGCTGTTTT
TGGGAGCAATTCAGAGAAATTTTGGTGAAACGATCAAGAATTTCTACAAAGGATACCCCCGCTTGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAA
TACAAAGATCAAATGGTGGCATTGTGTTGGGTTACTAGACAGCAATCTTTCTTGGTCTTGCTGGAAAATCACCACCACGAGGCTTCACCAGTATTCTCAGCAGGATACGC
GTTGGGAGCTTGTGGGAACTCAACAGACTCTAAGGATTTTCCTCTGGATTCTCTATTTTCTCTGAGAGATCTCTCTGTCACAGATCAATTGAGAGAGAAGGAGAGAGAGC
GATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAATGTAGTCTTAC
AAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTCCATTAGGTCCCACCGGTAGCTCATTCAGGGCGTTGAGCGAAAACAAGGATTGCAAGTTGCTGTTTT
TGGGAGCAATTCAGAGAAATTTTGGTGAAACGATCAAGAATTTCTACAAAGGATACCCCCGCTTGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAA
TACAAAGATCAAATGGTGGCATTGTGTTGGGTTACTAGACAGCAATCTTTCTTGGTCTTGCTGGAAAATCACCACCACGAGGCTTCACCAGTATTCTCAGCAGGATACGC
GTTGGGAGCTTGTGGGAACTCAACAGACTCTAAGGATTTTCCTCTGGATTCTCTATTTTCTCTGAGAGATCTCTCTGTCACAGATCAATTGAGAGAGAAGGAGAGAGAGC
GATAG
Protein sequenceShow/hide protein sequence
MRDCPLICTGESGLFADSISLPFWGQDRVGSWECSLTRWNSLLPDMRVSRGPLGPTGSSFRALSENKDCKLLFLGAIQRNFGETIKNFYKGYPRLHVSYMDALDQYVCIE
YKDQMVALCWVTRQQSFLVLLENHHHEASPVFSAGYALGACGNSTDSKDFPLDSLFSLRDLSVTDQLREKERER