| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0054839.1 gag/pol protein [Cucumis melo var. makuwa] | 4.9e-121 | 56.76 | Show/hide |
Query: QHQDTTKKPLLVFSLRIKRLKFRSNAMMNKITFNLTSLLNELQLYQSLLKNKGQMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSA
Q + + ++ SL + F++NA +NKI FNLT LLNELQ +Q+L K KG+ E EANV +KRKF++GSSS +K + S + +K G KGK
Subjt: QHQDTTKKPLLVFSLRIKRLKFRSNAMMNKITFNLTSLLNELQLYQSLLKNKGQMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSA
Query: AKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQENNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDR--------
+ K K A++GKC+HC +GH RNCPKYLA KK EK+ F E +S++ L++GE+TL+VGTGE++SAKAVG KL DR
Subjt: AKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQENNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDR--------
Query: IGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAEC
IGRLVK+GLLS+LED+SLP C+SCLEGKMTKR F GKG RAK PL L+HSDLCGPMNVKA GGYEYFI+FIDDYSRYG++YL+ K ++ EKFKE+KAE
Subjt: IGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAEC
Query: SAPSFAAAQ--NLLPQVAQQQILHKMIS--KASIL--------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDA
S A N +P + +++ KA I+ P + AMND D D+W+K+M+LEMESM+SNSVW L + PN VKPIGCKWIYKRKRD
Subjt: SAPSFAAAQ--NLLPQVAQQQILHKMIS--KASIL--------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDA
Query: AGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
AGK QTFKARLVA GYTQKEG+D EETFSPVAM+KSIRILLSIAT+YDYEI
Subjt: AGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| KAA0058278.1 gag/pol protein [Cucumis melo var. makuwa] | 5.6e-117 | 48.49 | Show/hide |
Query: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Q++ EANV HSKR+F S S+K QK+ KGK A + KGK K VA K KCFHCNVD H K NCPKYL KK+EKEGA+NH+ SS QE
Subjt: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Query: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
+SF+QL D EMTL+VGTG+VISA+AVG AKLGH N+DRIGRLVKNGLL+KL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Subjt: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Query: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------CSAP--------SFAAAQNLLPQVAQQQIL-
GG+EYFISFIDDYSRYGYLYLM KSEALEKFKE+K E C A + A ++L V + +
Subjt: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------CSAP--------SFAAAQNLLPQVAQQQIL-
Query: ------------------------------------------------------------------------------HKMISKASIL------------
HK SK +
Subjt: ------------------------------------------------------------------------------HKMISKASIL------------
Query: -------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPI
P K AMND D D+WVKAM+LEMESM+ NSVWEL DL GVKPI
Subjt: -------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPI
Query: GCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
GCKWIYKRKRD+AGKVQTFKARLVAKGYTQ+EGVD EETFS VAMLKSIRILLSIAT+YDYEI
Subjt: GCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| KAA0061169.1 gag/pol protein [Cucumis melo var. makuwa] | 1.2e-116 | 48.16 | Show/hide |
Query: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Q++ EANV HSKR+F S S+K QK+ KGK A + KGK K VA K KCFHCNVD H K NCPKYL KK+ KEGA+NH+ SS +E
Subjt: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Query: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
+SF+QL D EMTL+VGTG+VISA+AVG AKLGH N+DRIGRLVKNGLL+KL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Subjt: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Query: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-----------CSAP------------------------SFA------------AAQNLLPQ
GG+EYFISFIDDYSRYGYLYLM KSEALEKFKE+K E SAP S+A A ++L
Subjt: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-----------CSAP------------------------SFA------------AAQNLLPQ
Query: VAQQQIL-------------------------------------------------------------------------------HKMISKASIL----
V + + HK SK +
Subjt: VAQQQIL-------------------------------------------------------------------------------HKMISKASIL----
Query: ---------------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELAD
P K AMND D D+WVKAM+LEMESM+ NSVWEL D
Subjt: ---------------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELAD
Query: LPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
LP GVKPIGCKWIYKRKRD+A KVQTFKARLVAKGYTQ+EGVD EETFSPVAMLKSIRILLSIAT+YDYEI
Subjt: LPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| TYK04171.1 gag/pol protein [Cucumis melo var. makuwa] | 1.7e-118 | 48.85 | Show/hide |
Query: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Q++ EANV HSKR+F S S+K QK+ KGK A + KGK K VA K KCFHCNVD H K NCPKYL KK+EKEGA+NH+ SS QE
Subjt: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Query: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
+SF+QL D EMTL+VGTG+VISA+AVG AKLGH N+DRIGRLVKNGLL+KL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Subjt: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Query: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------------CSAP---------------------
GG+EYFISFIDDYSRYGYLYLM KSEALEKFKE+K E SAP
Subjt: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------------CSAP---------------------
Query: ---SFA------------AAQNLLPQVAQQQIL-------------------------------------------------------------------
S+A A ++L V + +
Subjt: ---SFA------------AAQNLLPQVAQQQIL-------------------------------------------------------------------
Query: ------------HKMISKASI-----------------------LPNGLKH--------------AMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNG
HK+ K + +G H AMND D D+WVKAM+LEMESM+ NSVWEL DLP G
Subjt: ------------HKMISKASI-----------------------LPNGLKH--------------AMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNG
Query: VKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
VKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQ+EGVD EETFSPVAMLKSIRILLSIAT+YDYEI
Subjt: VKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| TYK28885.1 gag/pol protein [Cucumis melo var. makuwa] | 1.9e-117 | 48.23 | Show/hide |
Query: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Q++ EANV HS R+F SS S+K QK+ KGK A + KGKTKVV KGKCFHC+VD H K NCPKYL KK+EKEGA+NH+ SS QE
Subjt: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Query: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
+SF+QL D EMTL+VGTG+VISA+AVG AKLGH N+++IGRL+KNGLL+KLEDDSLP CESC EGKMTKRPFT KGYRAKEPLELIHSDLCGPMNVKAR
Subjt: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Query: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------------CSAPSFAAAQNLLPQVAQQQILHKM
GG+EYFISFIDDYSRYGYLYLM KSEALEKFKE+KAE SAP QN + + + +L K+
Subjt: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------------CSAPSFAAAQNLLPQVAQQQILHKM
Query: ISKASIL---------------------------------------------------------------------------------------------
S S
Subjt: ISKASIL---------------------------------------------------------------------------------------------
Query: --------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKP
P K AMND D D+WVKA++LEMESM+ NSVWEL DLP GVKP
Subjt: --------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKP
Query: IGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
IGCKWIYKRKRD+AGKVQTFKARLVAKGYTQ+EGVD EETFSPVAMLKSIRILLSIAT+YDYEI
Subjt: IGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7USZ2 Gag/pol protein | 2.7e-117 | 48.49 | Show/hide |
Query: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Q++ EANV HSKR+F S S+K QK+ KGK A + KGK K VA K KCFHCNVD H K NCPKYL KK+EKEGA+NH+ SS QE
Subjt: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Query: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
+SF+QL D EMTL+VGTG+VISA+AVG AKLGH N+DRIGRLVKNGLL+KL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Subjt: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Query: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------CSAP--------SFAAAQNLLPQVAQQQIL-
GG+EYFISFIDDYSRYGYLYLM KSEALEKFKE+K E C A + A ++L V + +
Subjt: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------CSAP--------SFAAAQNLLPQVAQQQIL-
Query: ------------------------------------------------------------------------------HKMISKASIL------------
HK SK +
Subjt: ------------------------------------------------------------------------------HKMISKASIL------------
Query: -------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPI
P K AMND D D+WVKAM+LEMESM+ NSVWEL DL GVKPI
Subjt: -------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPI
Query: GCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
GCKWIYKRKRD+AGKVQTFKARLVAKGYTQ+EGVD EETFS VAMLKSIRILLSIAT+YDYEI
Subjt: GCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| A0A5A7V634 Gag/pol protein | 6.0e-117 | 48.16 | Show/hide |
Query: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Q++ EANV HSKR+F S S+K QK+ KGK A + KGK K VA K KCFHCNVD H K NCPKYL KK+ KEGA+NH+ SS +E
Subjt: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Query: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
+SF+QL D EMTL+VGTG+VISA+AVG AKLGH N+DRIGRLVKNGLL+KL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Subjt: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Query: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-----------CSAP------------------------SFA------------AAQNLLPQ
GG+EYFISFIDDYSRYGYLYLM KSEALEKFKE+K E SAP S+A A ++L
Subjt: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-----------CSAP------------------------SFA------------AAQNLLPQ
Query: VAQQQIL-------------------------------------------------------------------------------HKMISKASIL----
V + + HK SK +
Subjt: VAQQQIL-------------------------------------------------------------------------------HKMISKASIL----
Query: ---------------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELAD
P K AMND D D+WVKAM+LEMESM+ NSVWEL D
Subjt: ---------------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELAD
Query: LPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
LP GVKPIGCKWIYKRKRD+A KVQTFKARLVAKGYTQ+EGVD EETFSPVAMLKSIRILLSIAT+YDYEI
Subjt: LPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| A0A5D3BWT8 Gag/pol protein | 8.4e-119 | 48.85 | Show/hide |
Query: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Q++ EANV HSKR+F S S+K QK+ KGK A + KGK K VA K KCFHCNVD H K NCPKYL KK+EKEGA+NH+ SS QE
Subjt: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Query: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
+SF+QL D EMTL+VGTG+VISA+AVG AKLGH N+DRIGRLVKNGLL+KL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Subjt: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Query: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------------CSAP---------------------
GG+EYFISFIDDYSRYGYLYLM KSEALEKFKE+K E SAP
Subjt: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------------CSAP---------------------
Query: ---SFA------------AAQNLLPQVAQQQIL-------------------------------------------------------------------
S+A A ++L V + +
Subjt: ---SFA------------AAQNLLPQVAQQQIL-------------------------------------------------------------------
Query: ------------HKMISKASI-----------------------LPNGLKH--------------AMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNG
HK+ K + +G H AMND D D+WVKAM+LEMESM+ NSVWEL DLP G
Subjt: ------------HKMISKASI-----------------------LPNGLKH--------------AMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNG
Query: VKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
VKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQ+EGVD EETFSPVAMLKSIRILLSIAT+YDYEI
Subjt: VKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| A0A5D3DWF1 Gag/pol protein | 2.4e-121 | 56.76 | Show/hide |
Query: QHQDTTKKPLLVFSLRIKRLKFRSNAMMNKITFNLTSLLNELQLYQSLLKNKGQMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSA
Q + + ++ SL + F++NA +NKI FNLT LLNELQ +Q+L K KG+ E EANV +KRKF++GSSS +K + S + +K G KGK
Subjt: QHQDTTKKPLLVFSLRIKRLKFRSNAMMNKITFNLTSLLNELQLYQSLLKNKGQMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSA
Query: AKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQENNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDR--------
+ K K A++GKC+HC +GH RNCPKYLA KK EK+ F E +S++ L++GE+TL+VGTGE++SAKAVG KL DR
Subjt: AKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQENNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDR--------
Query: IGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAEC
IGRLVK+GLLS+LED+SLP C+SCLEGKMTKR F GKG RAK PL L+HSDLCGPMNVKA GGYEYFI+FIDDYSRYG++YL+ K ++ EKFKE+KAE
Subjt: IGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAEC
Query: SAPSFAAAQ--NLLPQVAQQQILHKMIS--KASIL--------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDA
S A N +P + +++ KA I+ P + AMND D D+W+K+M+LEMESM+SNSVW L + PN VKPIGCKWIYKRKRD
Subjt: SAPSFAAAQ--NLLPQVAQQQILHKMIS--KASIL--------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDA
Query: AGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
AGK QTFKARLVA GYTQKEG+D EETFSPVAM+KSIRILLSIAT+YDYEI
Subjt: AGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| A0A5D3DZX8 Gag/pol protein | 9.3e-118 | 48.23 | Show/hide |
Query: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Q++ EANV HS R+F SS S+K QK+ KGK A + KGKTKVV KGKCFHC+VD H K NCPKYL KK+EKEGA+NH+ SS QE
Subjt: QMEGEANVVHSKRKFEKGSSSGTKSVATSSKKTQKKNGNKGKALGSAAKSKGKTKVVADKGKCFHCNVDGHLKRNCPKYLAEKKEEKEGASNHLSSSFQE
Query: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
+SF+QL D EMTL+VGTG+VISA+AVG AKLGH N+++IGRL+KNGLL+KLEDDSLP CESC EGKMTKRPFT KGYRAKEPLELIHSDLCGPMNVKAR
Subjt: NNSFRQLNDGEMTLRVGTGEVISAKAVGAAKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAR
Query: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------------CSAPSFAAAQNLLPQVAQQQILHKM
GG+EYFISFIDDYSRYGYLYLM KSEALEKFKE+KAE SAP QN + + + +L K+
Subjt: GGYEYFISFIDDYSRYGYLYLMGRKSEALEKFKEFKAE-------------------------------------CSAPSFAAAQNLLPQVAQQQILHKM
Query: ISKASIL---------------------------------------------------------------------------------------------
S S
Subjt: ISKASIL---------------------------------------------------------------------------------------------
Query: --------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKP
P K AMND D D+WVKA++LEMESM+ NSVWEL DLP GVKP
Subjt: --------------------------------------------------------PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKP
Query: IGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
IGCKWIYKRKRD+AGKVQTFKARLVAKGYTQ+EGVD EETFSPVAMLKSIRILLSIAT+YDYEI
Subjt: IGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 1.4e-14 | 30.6 | Show/hide |
Query: PQVA---QQQILHKMISKASIL----PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYT
PQ++ + L+K++ A + PN +D W +A+N E+ + N+ W + P + +W++ K + G +KARLVA+G+T
Subjt: PQVA---QQQILHKMISKASIL----PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYT
Query: QKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
QK +D EETF+PVA + S R +LS+ Y+ ++
Subjt: QKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| P04146 Copia protein | 1.4e-09 | 31.06 | Show/hide |
Query: ISAKAVGAAKLGHTNIDRI--GRLVKNGLLSKLEDDSL--------PPCESCLEGKMTKRPFTGKGYRA--KEPLELIHSDLCGPMNVKARGGYEYFISF
I+AK +L H I G+L++ + D SL CE CL GK + PF + K PL ++HSD+CGP+ YF+ F
Subjt: ISAKAVGAAKLGHTNIDRI--GRLVKNGLLSKLEDDSL--------PPCESCLEGKMTKRPFTGKGYRA--KEPLELIHSDLCGPMNVKARGGYEYFISF
Query: IDDYSRYGYLYLMGRKSEALEKFKEFKAECSA
+D ++ Y YL+ KS+ F++F A+ A
Subjt: IDDYSRYGYLYLMGRKSEALEKFKEFKAECSA
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.2e-21 | 43.52 | Show/hide |
Query: PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSI
P LK ++ + ++ +KAM EMES+ N ++L +LP G +P+ CKW++K K+D K+ +KARLV KG+ QK+G+D +E FSPV + SIR +LS+
Subjt: PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSI
Query: ATYYDYEI
A D E+
Subjt: ATYYDYEI
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.9e-15 | 34.58 | Show/hide |
Query: KLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMGRKSEALE
++GH + + L K L+S + ++ PC+ CL GK + F R L+L++SD+CGPM +++ GG +YF++FIDD SR ++Y++ K + +
Subjt: KLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMGRKSEALE
Query: KFKEFKA
F++F A
Subjt: KFKEFKA
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 3.5e-13 | 40.7 | Show/hide |
Query: WVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIA
W +AM E++++ N W L P +GCKW++K K + G + KARLVAKG+ Q+EG+ ET+SPV +IR +L++A
Subjt: WVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIA
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.4e-14 | 42.16 | Show/hide |
Query: PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELA-DLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLS
P A+ DE W AM E+ + N W+L P+ V +GC+WI+ +K ++ G + +KARLVAKGY Q+ G+D ETFSPV SIRI+L
Subjt: PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELA-DLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLS
Query: IA
+A
Subjt: IA
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.4e-15 | 43.14 | Show/hide |
Query: PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELA-DLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLS
P AM D D W +AM E+ + N W+L P V +GC+WI+ +K ++ G + +KARLVAKGY Q+ G+D ETFSPV SIRI+L
Subjt: PNGLKHAMNDEDNDEWVKAMNLEMESMHSNSVWELA-DLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLS
Query: IA
+A
Subjt: IA
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | 1.9e-22 | 48.39 | Show/hide |
Query: WVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
W AM+ E+ +M + WE+ LP KPIGCKW+YK K ++ G ++ +KARLVAKGYTQ+EG+D ETFSPV L S++++L+I+ Y++ +
Subjt: WVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIATYYDYEI
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| ATMG00300.1 Gag-Pol-related retrotransposon family protein | 2.8e-05 | 35.29 | Show/hide |
Query: AKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV
++L H + + LVK G L + SL CE C+ GK + F+ + K PL+ +HSDL G +V
Subjt: AKLGHTNIDRIGRLVKNGLLSKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV
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| ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase) | 2.5e-14 | 40.7 | Show/hide |
Query: WVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIA
W +AM E++++ N W L P +GCKW++K K + G + KARLVAKG+ Q+EG+ ET+SPV +IR +L++A
Subjt: WVKAMNLEMESMHSNSVWELADLPNGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQKEGVDCEETFSPVAMLKSIRILLSIA
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