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Lag0028420 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028420
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr8:21328687..21330061
RNA-Seq ExpressionLag0028420
SyntenyLag0028420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157836.1 uncharacterized protein LOC111024449 [Momordica charantia]3.0e-1260.66Show/hide
Query:  ARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP
        +RND A+RNLE Q+GQ+A E+KNRP+GTLPS TE P  EG+E CK +T R GL Y+ P+ P
Subjt:  ARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP

XP_022158979.1 uncharacterized protein LOC111025424 [Momordica charantia]4.0e-1232.74Show/hide
Query:  MARNDVAV-------RNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEG
        MAR D  +       RN E Q+G +A  +KNRPQG+    TE P  EGKE CKAVTLR GL Y+ P  P    +I   E                     
Subjt:  MARNDVAV-------RNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEG

Query:  VEEPTTYGSTVARIETLRDSSESNQEEVRPLQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLSIN
                                        P+++    LE KPL  HLKY++LG+N TLPV ++ N
Subjt:  VEEPTTYGSTVARIETLRDSSESNQEEVRPLQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLSIN

XP_022159235.1 uncharacterized protein LOC111025653 [Momordica charantia]8.8e-1256.45Show/hide
Query:  MARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP
        M RNDV VR LE+Q+GQ+  E++ RPQG+LPS TE P R GKE C ++  R GL+Y+GP  P
Subjt:  MARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP

XP_027178132.1 uncharacterized protein LOC113777297 [Coffea eugenioides]6.1e-1340.37Show/hide
Query:  RNLEVQIGQIAQEIKNRPQGTLPSKTE-NPHREGKEECKAVTLRRGLEYDGPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEGVEEPTTYGSTVARI
        RN+EVQIGQIA  + NR QG LPSKTE NP    KE  KA+TLR G + + P  PV + E  + E  E+  + +E   +   + E  E   +  +T+   
Subjt:  RNLEVQIGQIAQEIKNRPQGTLPSKTE-NPHREGKEECKAVTLRRGLEYDGPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEGVEEPTTYGSTVARI

Query:  ETLRDSSESNQEEVRP----LQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLSINKHD
          +       Q  +       QPS I    LELKPL  HL+Y FLGEN TLPV +S +  D
Subjt:  ETLRDSSESNQEEVRP----LQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLSINKHD

XP_030502450.1 uncharacterized protein LOC115717606 [Cannabis sativa]7.7e-1639.78Show/hide
Query:  MARNDVAVRN-------LEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYD-GPEYPVNQEE-----------ILKGETLEDL---L
        MA+ND A+R+       LE Q+GQ+A E++NRPQ TLPS TENP R+GKE CKAVTLR G   +   E  ++Q E           I   E LE +   +
Subjt:  MARNDVAVRN-------LEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYD-GPEYPVNQEE-----------ILKGETLEDL---L

Query:  KEEEQEEKGGKKIEGVEEPTTYGSTVARIETLRDSSESNQEEVRPLQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLS
        KE  ++E+   K+  VE    +       E+L    E +    +P +PS+    +LELKPL  HLKY  LG+ +TLP  +S
Subjt:  KEEEQEEKGGKKIEGVEEPTTYGSTVARIETLRDSSESNQEEVRPLQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLS

TrEMBL top hitse value%identityAlignment
A0A6J1DXH8 uncharacterized protein LOC1110254741.1e-1038.52Show/hide
Query:  AVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYD----------GPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEGVEE
        ++RNLE+Q+GQ+A ++KNRP GTLPS TE P REGKE+CKA+T+R GL  +          G E   ++ EI +G+   +    EE E +G    + V+ 
Subjt:  AVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYD----------GPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEGVEE

Query:  PTTYGSTVARIETLRDSSESNQ
        P  Y    A ++ L+  ++ +Q
Subjt:  PTTYGSTVARIETLRDSSESNQ

A0A6J1DY39 uncharacterized protein LOC1110256534.3e-1256.45Show/hide
Query:  MARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP
        M RNDV VR LE+Q+GQ+  E++ RPQG+LPS TE P R GKE C ++  R GL+Y+GP  P
Subjt:  MARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP

A0A6J1DYG0 uncharacterized protein LOC1110257641.2e-1154.67Show/hide
Query:  MARNDVAV-------RNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYPVNQEEI
        MAR D  +       RN E Q+GQ+A E+KNRPQG+ P  TE P REGKE+CKAVTLR GL YD P  P    +I
Subjt:  MARNDVAV-------RNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYPVNQEEI

A0A6J1DZC3 uncharacterized protein LOC1110244491.5e-1260.66Show/hide
Query:  ARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP
        +RND A+RNLE Q+GQ+A E+KNRP+GTLPS TE P  EG+E CK +T R GL Y+ P+ P
Subjt:  ARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP

A0A6J1E110 uncharacterized protein LOC1110254241.5e-1233.33Show/hide
Query:  MARNDVAV-------RNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEG
        MAR D  +       RN E Q+G +A  +KNRPQG+    TE P  EGKE CKAVTLR GL YD P  P    +I   E                     
Subjt:  MARNDVAV-------RNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEG

Query:  VEEPTTYGSTVARIETLRDSSESNQEEVRPLQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLSIN
                                        P+++    LE KPL  HLKY++LG+N TLPV ++ N
Subjt:  VEEPTTYGSTVARIETLRDSSESNQEEVRPLQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLSIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGAAATGATGTCGCTGTTAGGAATTTGGAAGTACAGATTGGACAGATCGCTCAAGAAATAAAAAATAGACCACAAGGGACATTGCCCAGCAAGACTGAAAACCC
TCACCGAGAAGGTAAAGAGGAGTGCAAGGCTGTCACCTTGAGACGTGGATTAGAATACGATGGACCAGAATACCCCGTGAATCAAGAAGAAATATTAAAAGGGGAGACGC
TGGAAGACCTGCTTAAGGAGGAAGAACAAGAGGAAAAAGGTGGGAAAAAGATTGAAGGAGTAGAAGAACCGACCACATATGGTTCTACAGTAGCAAGGATAGAAACGTTG
AGAGATTCCTCGGAATCAAACCAGGAAGAAGTTAGGCCGCTGCAGCCATCTATGATCAACCTTTCGGATCTAGAACTCAAACCTCTATCGGAACATCTTAAATATAGTTT
CCTTGGAGAAAACAAAACACTACCAGTTCATTTAAGTATAAATAAGCATGATTTGACAAATATTGGACAGATCGCTCAAGAAATAAAAAATAGACCACAAGGGACATTGC
CCAGCAAGACTGAAAACCCTCACCGAGAAGGTAAAGAGGAGTGCAAGGCTGTCACCTTGAGACGTGGATTAGAATACGATGGACCAGAATACCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGAAATGATGTCGCTGTTAGGAATTTGGAAGTACAGATTGGACAGATCGCTCAAGAAATAAAAAATAGACCACAAGGGACATTGCCCAGCAAGACTGAAAACCC
TCACCGAGAAGGTAAAGAGGAGTGCAAGGCTGTCACCTTGAGACGTGGATTAGAATACGATGGACCAGAATACCCCGTGAATCAAGAAGAAATATTAAAAGGGGAGACGC
TGGAAGACCTGCTTAAGGAGGAAGAACAAGAGGAAAAAGGTGGGAAAAAGATTGAAGGAGTAGAAGAACCGACCACATATGGTTCTACAGTAGCAAGGATAGAAACGTTG
AGAGATTCCTCGGAATCAAACCAGGAAGAAGTTAGGCCGCTGCAGCCATCTATGATCAACCTTTCGGATCTAGAACTCAAACCTCTATCGGAACATCTTAAATATAGTTT
CCTTGGAGAAAACAAAACACTACCAGTTCATTTAAGTATAAATAAGCATGATTTGACAAATATTGGACAGATCGCTCAAGAAATAAAAAATAGACCACAAGGGACATTGC
CCAGCAAGACTGAAAACCCTCACCGAGAAGGTAAAGAGGAGTGCAAGGCTGTCACCTTGAGACGTGGATTAGAATACGATGGACCAGAATACCCGTGA
Protein sequenceShow/hide protein sequence
MARNDVAVRNLEVQIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYPVNQEEILKGETLEDLLKEEEQEEKGGKKIEGVEEPTTYGSTVARIETL
RDSSESNQEEVRPLQPSMINLSDLELKPLSEHLKYSFLGENKTLPVHLSINKHDLTNIGQIAQEIKNRPQGTLPSKTENPHREGKEECKAVTLRRGLEYDGPEYP