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Lag0028423 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028423
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:21358847..21359630
RNA-Seq ExpressionLag0028423
SyntenyLag0028423
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3467186.1 glycine, alanine and asparagine-rich protein-like [Gossypium australe]4.9e-0738.32Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        V+ D++G +   + A  +  S+   A+A A L  +RL T + +  +TI  DS TVI     K    S+I+ T+ DI+E  KFF+ I+FHF +R  N LAH
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGL
        +IA   L
Subjt:  RIAQMGL

MBA0701815.1 hypothetical protein [Gossypium aridum]1.2e-0534.58Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        ++RD+ GN+ A + AC  +  +P  AEA+A    M+L   L ++ L +  DSLTVI          S I+  + D+K+  K F+  TF    R+ NG+AH
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGL
        ++   GL
Subjt:  RIAQMGL

XP_027065006.1 uncharacterized protein LOC113691032 [Coffea arabica]1.9e-0630Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        + RD  G L   +        T +E E LAV   + +A      ++ + SD  +V++ IN     D SIAT L DI+E  K F+   F F  R  N  +H
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGLSTLPHL-WLGDYPEWMVDFSLKE
         +AQ  +  +  + W  ++P W++D + K+
Subjt:  RIAQMGLSTLPHL-WLGDYPEWMVDFSLKE

XP_027067422.1 uncharacterized protein LOC113693034 [Coffea arabica]1.1e-0629.55Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        + R+  G L   +        T +E EALAV   + +A  +   ++ + SD  +V++ IN     D SIAT L DI+E  K F+   F F  R  N  +H
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGLSTLPHL---WLGDYPEWMVDFSLKE
         +AQ  +  +  +   W  ++P W++D + K+
Subjt:  RIAQMGLSTLPHL---WLGDYPEWMVDFSLKE

XP_027067423.1 uncharacterized protein LOC113693035 [Coffea arabica]6.4e-0730Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        + R+  G L   +        T +E EALAV   + +A  +   ++ + SD  +V++ IN     D SIAT L DI+E  K F+   F F  R  N  +H
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGLSTLPHL-WLGDYPEWMVDFSLKE
         +AQ  +  +  + W  ++P W++D + K+
Subjt:  RIAQMGLSTLPHL-WLGDYPEWMVDFSLKE

TrEMBL top hitse value%identityAlignment
A0A5B6VDX1 Glycine, alanine and asparagine-rich protein-like2.4e-0738.32Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        V+ D++G +   + A  +  S+   A+A A L  +RL T + +  +TI  DS TVI     K    S+I+ T+ DI+E  KFF+ I+FHF +R  N LAH
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGL
        +IA   L
Subjt:  RIAQMGL

A0A6P6SGT5 uncharacterized protein LOC1136910329.0e-0730Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        + RD  G L   +        T +E E LAV   + +A      ++ + SD  +V++ IN     D SIAT L DI+E  K F+   F F  R  N  +H
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGLSTLPHL-WLGDYPEWMVDFSLKE
         +AQ  +  +  + W  ++P W++D + K+
Subjt:  RIAQMGLSTLPHL-WLGDYPEWMVDFSLKE

A0A6P6SNG7 uncharacterized protein LOC1136930345.3e-0729.55Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        + R+  G L   +        T +E EALAV   + +A  +   ++ + SD  +V++ IN     D SIAT L DI+E  K F+   F F  R  N  +H
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGLSTLPHL---WLGDYPEWMVDFSLKE
         +AQ  +  +  +   W  ++P W++D + K+
Subjt:  RIAQMGLSTLPHL---WLGDYPEWMVDFSLKE

A0A6P6SNH4 uncharacterized protein LOC1136930353.1e-0730Show/hide
Query:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH
        + R+  G L   +        T +E EALAV   + +A  +   ++ + SD  +V++ IN     D SIAT L DI+E  K F+   F F  R  N  +H
Subjt:  VMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAH

Query:  RIAQMGLSTLPHL-WLGDYPEWMVDFSLKE
         +AQ  +  +  + W  ++P W++D + K+
Subjt:  RIAQMGLSTLPHL-WLGDYPEWMVDFSLKE

A0A6P6UZA6 uncharacterized protein LOC1137160635.8e-0630.77Show/hide
Query:  EALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAHRIAQMGLSTLPHL-WLGDYPEWMVDF
        EALA+   + +A     K++ + SD  +V+  IN     + +IAT L D++E  K F+  +F F SR  N ++H +A   +  + ++ W  D+P W+++ 
Subjt:  EALAVLEGMRLATMLNVKRLTILSDSLTVINSINYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAHRIAQMGLSTLPHL-WLGDYPEWMVDF

Query:  SLKE
         +KE
Subjt:  SLKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTAAAGACAAGTGGTTAAGTTTGGCTGGATATTCTATGGAAGCATTGGAGAGGATCTGTGTGGGGCCTGGGCGATTTGGAACGATAGAAACAATGTCGTTCAT
CAGCGCTAGATTCCTAGCCCATTGGGCAGTATACATGTGGTTTGTGATGCGTGATAAAGTGGGCAATTTACAGGCGGTGAGAAATGCTTGTGCTACGACGTTTTCAACTC
CTTTGGAAGCGGAAGCGTTGGCGGTGCTTGAAGGGATGCGTTTGGCAACAATGTTGAATGTTAAGCGTTTGACAATATTGTCAGATTCATTGACGGTGATAAATTCAATA
AACTACAAGATACACGTGGATTCAAGTATTGCGACGACACTATGGGACATCAAAGAGTATCATAAGTTTTTTGAGTGTATTACTTTTCATTTTACGAGTCGTAATTTTAA
TGGCTTGGCTCATAGAATTGCCCAAATGGGTTTATCTACATTACCACATCTGTGGTTAGGTGATTATCCTGAGTGGATGGTCGATTTTTCGCTCAAAGAGCGATGTTTCT
TTGTATCCCATGGGATTCTTTTCTCTGTTGAATGTGAATGGATAAAAGGCCCACGCAGCGGAAAGTATTACCGAACCTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATTAAAGACAAGTGGTTAAGTTTGGCTGGATATTCTATGGAAGCATTGGAGAGGATCTGTGTGGGGCCTGGGCGATTTGGAACGATAGAAACAATGTCGTTCAT
CAGCGCTAGATTCCTAGCCCATTGGGCAGTATACATGTGGTTTGTGATGCGTGATAAAGTGGGCAATTTACAGGCGGTGAGAAATGCTTGTGCTACGACGTTTTCAACTC
CTTTGGAAGCGGAAGCGTTGGCGGTGCTTGAAGGGATGCGTTTGGCAACAATGTTGAATGTTAAGCGTTTGACAATATTGTCAGATTCATTGACGGTGATAAATTCAATA
AACTACAAGATACACGTGGATTCAAGTATTGCGACGACACTATGGGACATCAAAGAGTATCATAAGTTTTTTGAGTGTATTACTTTTCATTTTACGAGTCGTAATTTTAA
TGGCTTGGCTCATAGAATTGCCCAAATGGGTTTATCTACATTACCACATCTGTGGTTAGGTGATTATCCTGAGTGGATGGTCGATTTTTCGCTCAAAGAGCGATGTTTCT
TTGTATCCCATGGGATTCTTTTCTCTGTTGAATGTGAATGGATAAAAGGCCCACGCAGCGGAAAGTATTACCGAACCTACTGA
Protein sequenceShow/hide protein sequence
MDIKDKWLSLAGYSMEALERICVGPGRFGTIETMSFISARFLAHWAVYMWFVMRDKVGNLQAVRNACATTFSTPLEAEALAVLEGMRLATMLNVKRLTILSDSLTVINSI
NYKIHVDSSIATTLWDIKEYHKFFECITFHFTSRNFNGLAHRIAQMGLSTLPHLWLGDYPEWMVDFSLKERCFFVSHGILFSVECEWIKGPRSGKYYRTY