CuGenDBv2

Gene ID	Lag0028427
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	40s ribosomal protein SA
Genome location	chr8:21490163..21492297
RNA-Seq Expression	Lag0028427
Synteny	Lag0028427
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0002181 - cytoplasmic translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR005707 - Ribosomal protein S2, eukaryotic/archaeal IPR018130 - Ribosomal protein S2, conserved site IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG5234359.1 40S ribosomal protein [Salix suchowensis]

2.8e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

XP_006376986.1 40S ribosomal protein Sa-2 isoform X1 [Populus trichocarpa]

2.8e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

XP_011001299.1 PREDICTED: 40S ribosomal protein SA-like isoform X1 [Populus euphratica]

2.8e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

XP_011040351.1 PREDICTED: 40S ribosomal protein SA-like [Populus euphratica]

2.8e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

XP_022998206.1 40S ribosomal protein SA-like [Cucurbita maxima]

2.8e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C6Q9 40S ribosomal protein SA

1.4e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

A0A6J1I769 40S ribosomal protein SA

1.4e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

A0A6J1I7P9 40S ribosomal protein SA

1.4e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

A0A6J1K9M4 40S ribosomal protein SA

1.4e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

A9P891 40S ribosomal protein SA

1.4e-10

85.37

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

SwissProt top hits

e value

%identity

Alignment

A5BUU4 40S ribosomal protein SA

1.4e-12

82.93

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKE  IQMMLAA+ HLGTKNCNFQMERYVFKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

O22518 40S ribosomal protein SA

3.2e-12

80.49

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        SQKEA IQMMLAA  HLGTKNC+FQMERY+FKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

O65751 40S ribosomal protein SA

1.9e-12

80.49

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        +QKEA IQMMLAA  HLGTKNCNFQMERY+FKRRNDG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

Q08682 40S ribosomal protein Sa-1

2.0e-11

76.92

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMF
        SQKEA ++MM AA+ HLGTKNCN+QMERYVFKRRNDG++
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMF

Q9ZSR8 40S ribosomal protein SA

1.6e-11

79.49

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMF
        SQKEA I+MM AA+ HLGTKNCN+QMERYVFKRRNDG++
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMF

Arabidopsis top hits

e value

%identity

Alignment

AT1G72370.1 40s ribosomal protein SA

1.5e-12

76.92

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMF
        SQKEA ++MM AA+ HLGTKNCN+QMERYVFKRRNDG++
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMF

AT1G72370.2 40s ribosomal protein SA

1.5e-12

76.92

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMF
        SQKEA ++MM AA+ HLGTKNCN+QMERYVFKRRNDG++
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMF

AT3G04770.1 40s ribosomal protein SA B

1.9e-12

75.61

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        S+KEA IQMML+A  HLGTKNCN+QMERYVFKRR+DG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

AT3G04770.2 40s ribosomal protein SA B

1.9e-12

75.61

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Query:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI
        S+KEA IQMML+A  HLGTKNCN+QMERYVFKRR+DG++ I
Subjt:  SQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSI

Sequences

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CDS sequence

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ATGTCAACAAAGTTTACAGCAAGTACCTTGTGCAACCAAAGCTGCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCGTAGCTCGAACTTGCCAGCGAACAATACAACCAC
ATTGCTCGATGTTTTATGGAGAAAAGAACTTGTGCGTGTGTGTTTACCTGGACAGTCAGGGCTGGAAAATTGTTTCTATTGTGCTTGTGGTGGAATTTTGTTTGTGTTTG
ATTTTGACTTACTCGATTACATTCTAGGGATCATCTACACTCTCTATGCCACCGTCTTCGTCGAGTTTATGCCACTCGTGATCTTGCTGAGGTTACCTTCGGATGAAATA
AATAACATCAACTCACAGAAGGAGGCTGGCATTCAGATGATGTTGGCCGCTAAGGCTCATCTTGGCACCAAAAACTGCAATTTTCAAATGGAACGATACGTTTTCAAGCG
CCGGAATGATGGTATGTTTTCAATCTACTCGCTTGTAGATCTTCGCAGTTGGTGTTAG

mRNA sequence

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Protein sequence

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MSTKFTASTLCNQSCKARKSSPARTRSSNLPANNTTTLLDVLWRKELVRVCLPGQSGLENCFYCACGGILFVFDFDLLDYILGIIYTLYATVFVEFMPLVILLRLPSDEI
NNINSQKEAGIQMMLAAKAHLGTKNCNFQMERYVFKRRNDGMFSIYSLVDLRSWC

Lag0028427 (gene) of Sponge gourd (AG-4) v1 genome