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Lag0028438 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028438
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:21740548..21741315
RNA-Seq ExpressionLag0028438
SyntenyLag0028438
Gene Ontology termsGO:0043167 - ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051973.1 E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa]7.3e-5265.16Show/hide
Query:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE
        D ++FL+W K  ENFFNYM TP+ KKV LV LKL+ GA AWWDQLEINRQRYGK   + WE+MK+L+K RFLP N+EQ LY+QYQNCRQG RSV +Y EE
Subjt:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE

Query:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL
        FHRL  RTNL E + H +ARF GGLR+DIKE++ LQP   L+EAIS A TV+E +
Subjt:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL

KAA0054966.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]1.5e-5258.76Show/hide
Query:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE
        +IE FL+W K+ ENFF YM T ++KKV LVALKLKGGA AWWDQ+ +NRQ+ GK   +SWE+MK+LMK+RF+P N+EQ LY QYQNCRQG R   +Y EE
Subjt:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE

Query:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQLENCFKRIQEDLRPQLLKENKST
        FHRLG RTNL+E ++HL++ F GGLR+D+KE++ LQP  HL+EAI+ A TVEE +EN  K  ++  RP     +K T
Subjt:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQLENCFKRIQEDLRPQLLKENKST

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]5.4e-5569.68Show/hide
Query:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE
        +IE FL+W K  ENFFNYM TPE KKV LVALKL+ GA AWWDQLEINRQR GK+  +SWE+MK+L+K RFLP N+EQ LY+QYQNCRQG RSV +Y EE
Subjt:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE

Query:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL
        FHRL ARTNL E +QH VARF GGLR+DIKE++ LQP   L+EAIS A TVEE +
Subjt:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]5.9e-5468.39Show/hide
Query:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE
        +IE FL+W K  ENFF YM TPE KKV LVALKL+ GA AWWDQLEINRQR GK+  +SWE+MK+L+K RFLP N+EQ LY+QYQNCRQG R+V +Y EE
Subjt:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE

Query:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL
        FHRL ARTNL E +QH VARF GGLR+DIKE++ LQP   L+EAIS A TVEE +
Subjt:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL

XP_031745523.1 uncharacterized protein LOC116405899 [Cucumis sativus]1.3e-5670.32Show/hide
Query:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE
        DIE+FL+W K  ENFF+YM TPE KKVRLVALKLKGGA AWW+QLE+NRQR  KR  +SWE+MK+L+K RFLP N+EQ LY+QYQNCRQGTR+V +Y EE
Subjt:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE

Query:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL
        FHRL ARTNL E +QH +ARF GGLR+DIKE++ LQPL  L+EAIS A TVEE +
Subjt:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL

TrEMBL top hitse value%identityAlignment
A0A5A7U7S6 E3 ubiquitin-protein ligase SHPRH isoform X43.5e-5265.16Show/hide
Query:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE
        D ++FL+W K  ENFFNYM TP+ KKV LV LKL+ GA AWWDQLEINRQRYGK   + WE+MK+L+K RFLP N+EQ LY+QYQNCRQG RSV +Y EE
Subjt:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE

Query:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL
        FHRL  RTNL E + H +ARF GGLR+DIKE++ LQP   L+EAIS A TV+E +
Subjt:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQL

A0A5D3BK55 CCHC-type domain-containing protein1.1e-4552.6Show/hide
Query:  IETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEEF
        +  FL+W K+ E  FNYM+T E KKV LVALKLK GA AWWDQLE++RQR GK+  +SWE+MK+L+K RFLP N+EQ LY+QYQNCRQGTR+V DY EEF
Subjt:  IETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEEF

Query:  HRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHL-------NEAISAATTVEEQLENCFKRIQEDLRPQLLKENKSTAMLQEISVR
        HRL AR NL E +QH +ARF G LR+DIKE++ LQP   L        ++I    TV  QL    K   ++++ Q L  +K   ++ +  V+
Subjt:  HRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHL-------NEAISAATTVEEQLENCFKRIQEDLRPQLLKENKSTAMLQEISVR

A0A5D3DGR0 Reverse transcriptase7.1e-5358.76Show/hide
Query:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE
        +IE FL+W K+ ENFF YM T ++KKV LVALKLKGGA AWWDQ+ +NRQ+ GK   +SWE+MK+LMK+RF+P N+EQ LY QYQNCRQG R   +Y EE
Subjt:  DIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEE

Query:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQLENCFKRIQEDLRPQLLKENKST
        FHRLG RTNL+E ++HL++ F GGLR+D+KE++ LQP  HL+EAI+ A TVEE +EN  K  ++  RP     +K T
Subjt:  FHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQLENCFKRIQEDLRPQLLKENKST

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X17.6e-4758.71Show/hide
Query:  MDIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAE
        MD+ETFL+  K+VENFF+Y +TPE KKV+LVA K++ GA AWWDQLEIN +R GK+  +SW RM RLM+ERFLP NFEQ+LY  YQ CRQG +++ DY E
Subjt:  MDIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAE

Query:  EFHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQ
         FHRLGA+TN+ ET+ + +ARF  GLR DI++Q+ +QP+  L +AI  AT +E++
Subjt:  EFHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQ

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X27.6e-4758.71Show/hide
Query:  MDIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAE
        MD+ETFL+  K+VENFF+Y +TPE KKV+LVA K++ GA AWWDQLEIN +R GK+  +SW RM RLM+ERFLP NFEQ+LY  YQ CRQG +++ DY E
Subjt:  MDIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAE

Query:  EFHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQ
         FHRLGA+TN+ ET+ + +ARF  GLR DI++Q+ +QP+  L +AI  AT +E++
Subjt:  EFHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G47350.1 F-box associated ubiquitination effector family protein1.4e-0534.62Show/hide
Query:  LYDQYQNCRQGTRSVFDYAEEFHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQLEN
        +Y++ QN R  TRSV +YAEEF+ L    ++ ++Q  LV+R  G LR  ++  L+      ++EA   A + E+Q+ +
Subjt:  LYDQYQNCRQGTRSVFDYAEEFHRLGARTNLIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQLEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTGAAACCTTCCTCGAATGGACCAAACATGTGGAGAATTTTTTCAATTATATGAGTACACCCGAAAGTAAAAAGGTAAGATTGGTAGCTTTGAAGTTGAAAGG
TGGAGCCCAAGCATGGTGGGACCAACTAGAGATTAACCGGCAAAGGTATGGTAAACGGTCTACCCAAAGTTGGGAAAGAATGAAAAGGTTAATGAAAGAAAGATTCTTGC
CCATAAATTTTGAGCAAATTCTTTATGACCAATATCAAAACTGTCGACAAGGAACAAGATCTGTTTTTGATTATGCTGAGGAATTTCATAGGTTGGGGGCAAGAACCAAT
CTTATCGAAACTCAACAACACCTTGTAGCAAGATTCAAAGGAGGCTTACGTTATGACATCAAAGAACAGTTAGCTCTTCAACCTCTTGGACACCTCAATGAAGCTATTTC
CGCGGCAACAACAGTGGAAGAGCAATTAGAAAATTGTTTTAAGCGTATTCAAGAAGACCTGCGGCCGCAGCTCTTAAAGGAAAACAAGTCGACAGCAATGCTCCAAGAGA
TATCAGTAAGAAGACTACCAATACCTATTCAAGGCCGACCCTTGGGAAATGCTTTAGATGCAATCAAACAGGCCATTTATCGAACAAATGCCCCCAACGCCAGTGTTTTA
AAAGGCTCAAGGCGCACTAAGGCGCAATGGCCTCCTGGGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATTGAAACCTTCCTCGAATGGACCAAACATGTGGAGAATTTTTTCAATTATATGAGTACACCCGAAAGTAAAAAGGTAAGATTGGTAGCTTTGAAGTTGAAAGG
TGGAGCCCAAGCATGGTGGGACCAACTAGAGATTAACCGGCAAAGGTATGGTAAACGGTCTACCCAAAGTTGGGAAAGAATGAAAAGGTTAATGAAAGAAAGATTCTTGC
CCATAAATTTTGAGCAAATTCTTTATGACCAATATCAAAACTGTCGACAAGGAACAAGATCTGTTTTTGATTATGCTGAGGAATTTCATAGGTTGGGGGCAAGAACCAAT
CTTATCGAAACTCAACAACACCTTGTAGCAAGATTCAAAGGAGGCTTACGTTATGACATCAAAGAACAGTTAGCTCTTCAACCTCTTGGACACCTCAATGAAGCTATTTC
CGCGGCAACAACAGTGGAAGAGCAATTAGAAAATTGTTTTAAGCGTATTCAAGAAGACCTGCGGCCGCAGCTCTTAAAGGAAAACAAGTCGACAGCAATGCTCCAAGAGA
TATCAGTAAGAAGACTACCAATACCTATTCAAGGCCGACCCTTGGGAAATGCTTTAGATGCAATCAAACAGGCCATTTATCGAACAAATGCCCCCAACGCCAGTGTTTTA
AAAGGCTCAAGGCGCACTAAGGCGCAATGGCCTCCTGGGGCCTAG
Protein sequenceShow/hide protein sequence
MDIETFLEWTKHVENFFNYMSTPESKKVRLVALKLKGGAQAWWDQLEINRQRYGKRSTQSWERMKRLMKERFLPINFEQILYDQYQNCRQGTRSVFDYAEEFHRLGARTN
LIETQQHLVARFKGGLRYDIKEQLALQPLGHLNEAISAATTVEEQLENCFKRIQEDLRPQLLKENKSTAMLQEISVRRLPIPIQGRPLGNALDAIKQAIYRTNAPNASVL
KGSRRTKAQWPPGA