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Lag0028442 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028442
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase-type DNA-binding superfamily protein
Genome locationchr8:21838413..21840551
RNA-Seq ExpressionLag0028442
SyntenyLag0028442
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006606 - protein import into nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR028158 - RPA-interacting protein, N-terminal domain
IPR036955 - AP2/ERF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ99094.1 uncharacterized protein E5676_scaffold248G002980 [Cucumis melo var. makuwa]4.1e-2783.78Show/hide
Query:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        ME+ +PN V +TRRSSIKTHPRYN++QSWKQKLRENCCKRVREGRSRLLWKMRL +SSPTYPHSL+NRQQD IK
Subjt:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

XP_008437393.1 PREDICTED: uncharacterized protein LOC103482820 [Cucumis melo]4.1e-2783.78Show/hide
Query:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        ME+ +PN V +TRRSSIKTHPRYN++QSWKQKLRENCCKRVREGRSRLLWKMRL +SSPTYPHSL+NRQQD IK
Subjt:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

XP_022137008.1 uncharacterized protein LOC111008573 isoform X1 [Momordica charantia]1.1e-2774.12Show/hide
Query:  LKFAIEVETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        L+ A+  + V+MEE+DPNS T+ RR S+KTHPRYN+ QSWKQKLRENC KRVREGRSRLLWKMRL +SSPTYPHSL+NRQQD +K
Subjt:  LKFAIEVETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

XP_022137009.1 uncharacterized protein LOC111008573 isoform X2 [Momordica charantia]1.1e-2774.12Show/hide
Query:  LKFAIEVETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        L+ A+  + V+MEE+DPNS T+ RR S+KTHPRYN+ QSWKQKLRENC KRVREGRSRLLWKMRL +SSPTYPHSL+NRQQD +K
Subjt:  LKFAIEVETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

XP_038893885.1 uncharacterized protein LOC120082685 isoform X2 [Benincasa hispida]7.0e-2782.43Show/hide
Query:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        ME+ DPNSV +T RSSIKTHPRYN++QSWKQKLRENCCKRVREGRSRLLWKMRL ++SP+YPHSL+NRQQD IK
Subjt:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

TrEMBL top hitse value%identityAlignment
A0A0A0LTY4 Uncharacterized protein3.4e-2785.14Show/hide
Query:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        MEE  PN V +TRRSSIKTHPRYN++QSWKQKLRENCCKRVREGRSRLLWKMRL +SSPTY HSL+NRQQDLIK
Subjt:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

A0A1S3AU18 uncharacterized protein LOC1034828202.0e-2783.78Show/hide
Query:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        ME+ +PN V +TRRSSIKTHPRYN++QSWKQKLRENCCKRVREGRSRLLWKMRL +SSPTYPHSL+NRQQD IK
Subjt:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

A0A5D3BJ40 Uncharacterized protein2.0e-2783.78Show/hide
Query:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        ME+ +PN V +TRRSSIKTHPRYN++QSWKQKLRENCCKRVREGRSRLLWKMRL +SSPTYPHSL+NRQQD IK
Subjt:  MEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

A0A6J1C5Y2 uncharacterized protein LOC111008573 isoform X25.3e-2874.12Show/hide
Query:  LKFAIEVETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        L+ A+  + V+MEE+DPNS T+ RR S+KTHPRYN+ QSWKQKLRENC KRVREGRSRLLWKMRL +SSPTYPHSL+NRQQD +K
Subjt:  LKFAIEVETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

A0A6J1C935 uncharacterized protein LOC111008573 isoform X15.3e-2874.12Show/hide
Query:  LKFAIEVETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK
        L+ A+  + V+MEE+DPNS T+ RR S+KTHPRYN+ QSWKQKLRENC KRVREGRSRLLWKMRL +SSPTYPHSL+NRQQD +K
Subjt:  LKFAIEVETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIK

SwissProt top hitse value%identityAlignment
B8AMA9 APETALA2-like protein 24.5e-0866.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

B8B8J2 APETALA2-like protein 34.5e-0866.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

P47927 Floral homeotic protein APETALA 24.5e-0866.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

Q84TB5 APETALA2-like protein 24.5e-0866.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

Q8H443 APETALA2-like protein 34.5e-0866.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

Arabidopsis top hitse value%identityAlignment
AT2G28550.1 related to AP2.73.2e-0966.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

AT2G28550.2 related to AP2.73.2e-0966.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

AT2G28550.3 related to AP2.73.2e-0966.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

AT4G36920.1 Integrase-type DNA-binding superfamily protein3.2e-0966.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR

AT4G36920.2 Integrase-type DNA-binding superfamily protein3.2e-0966.67Show/hide
Query:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR
        +Y GVTFYRRTGRWE  I        D GKQVYLGGFDTAH A R
Subjt:  KYCGVTFYRRTGRWELQICTFSVRYKDYGKQVYLGGFDTAHPATR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCCCTCTTCTTGGTCTCCATCATCTTCTCTTTGTATTCTTCTTCTCTATCGAATCCAACCGTGGCGACGACGTGGGTGACCACAACACGATCCCAGATCCTCTC
TCTCGGTGATGAGATCTGTTTTGGCAGCGGCACAGACCAGATCCTCTCTCTCGGTGTTTGCTGCTTCGCGTGCCGACCCACCCCGTGTGACACTCCCCTACATGATGATT
CTGGTGCAAAACAAACTCACGAACCACGGCGTTGCATCGAAGTTGCAGCAACAGAATCAATCGATGAGAAAGAACCAGCAAGGCCCAAGGTCTTGAAGTTCGCAATCGAA
GTTGAAACCGTCGAAATGGAGGAGAAGGATCCAAATTCCGTCACTCGAACCCGTCGTTCTTCGATTAAGACCCATCCTCGTTACAACGATCGTCAATCATGGAAGCAGAA
GCTGAGGGAGAACTGTTGCAAGAGGGTCAGAGAAGGAAGAAGCCGCTTGCTCTGGAAGATGAGGTTGGCCATATCCTCGCCCACTTATCCCCATTCTCTCGATAATCGAC
AGCAGGATTTGATCAAATATTGTGGGGTTACCTTTTATCGAAGAACAGGAAGATGGGAATTGCAAATCTGCACATTCTCTGTTCGTTACAAAGACTACGGGAAACAGGTT
TATTTAGGTGGTTTTGATACTGCTCATCCTGCTACTAGATTTCGACAAGGTCATTCTAGCCCCAACCAAGGGATTTCGTTTCTTATGAAGAAGTTATGGTCGATAAAATC
CAGCGCCAAAACTACGGAAATTGAGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCCCTCTTCTTGGTCTCCATCATCTTCTCTTTGTATTCTTCTTCTCTATCGAATCCAACCGTGGCGACGACGTGGGTGACCACAACACGATCCCAGATCCTCTC
TCTCGGTGATGAGATCTGTTTTGGCAGCGGCACAGACCAGATCCTCTCTCTCGGTGTTTGCTGCTTCGCGTGCCGACCCACCCCGTGTGACACTCCCCTACATGATGATT
CTGGTGCAAAACAAACTCACGAACCACGGCGTTGCATCGAAGTTGCAGCAACAGAATCAATCGATGAGAAAGAACCAGCAAGGCCCAAGGTCTTGAAGTTCGCAATCGAA
GTTGAAACCGTCGAAATGGAGGAGAAGGATCCAAATTCCGTCACTCGAACCCGTCGTTCTTCGATTAAGACCCATCCTCGTTACAACGATCGTCAATCATGGAAGCAGAA
GCTGAGGGAGAACTGTTGCAAGAGGGTCAGAGAAGGAAGAAGCCGCTTGCTCTGGAAGATGAGGTTGGCCATATCCTCGCCCACTTATCCCCATTCTCTCGATAATCGAC
AGCAGGATTTGATCAAATATTGTGGGGTTACCTTTTATCGAAGAACAGGAAGATGGGAATTGCAAATCTGCACATTCTCTGTTCGTTACAAAGACTACGGGAAACAGGTT
TATTTAGGTGGTTTTGATACTGCTCATCCTGCTACTAGATTTCGACAAGGTCATTCTAGCCCCAACCAAGGGATTTCGTTTCTTATGAAGAAGTTATGGTCGATAAAATC
CAGCGCCAAAACTACGGAAATTGAGGCTTAG
Protein sequenceShow/hide protein sequence
MFSLFLVSIIFSLYSSSLSNPTVATTWVTTTRSQILSLGDEICFGSGTDQILSLGVCCFACRPTPCDTPLHDDSGAKQTHEPRRCIEVAATESIDEKEPARPKVLKFAIE
VETVEMEEKDPNSVTRTRRSSIKTHPRYNDRQSWKQKLRENCCKRVREGRSRLLWKMRLAISSPTYPHSLDNRQQDLIKYCGVTFYRRTGRWELQICTFSVRYKDYGKQV
YLGGFDTAHPATRFRQGHSSPNQGISFLMKKLWSIKSSAKTTEIEA