; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028443 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028443
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr8:21855175..21856817
RNA-Seq ExpressionLag0028443
SyntenyLag0028443
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035317.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.0e-2550.35Show/hide
Query:  SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTSVFDRLKVTSDQHK
        SI +V+ N+ SS  +N      S EINQR  VFDRI+PSTT+  IFQR+S+   EEE+Q LT       TF+RLS+  S+K +PSTS FDRLK+T+DQ +
Subjt:  SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTSVFDRLKVTSDQHK

Query:  RKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS
        R++ +L+A  F E N+D K+HS + S MKRK S+ IN E   S
Subjt:  RKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS

KAA0045439.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.3e-2538.14Show/hide
Query:  LVTLKESSSRNFLSIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTS
        L  + E ++ +  SI +V+ N+ SS  +N      S EINQR  VFDRI+PSTT  SIFQR+SM   EEE+Q  T       TF+RLS+  S+K +PSTS
Subjt:  LVTLKESSSRNFLSIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTS

Query:  VFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSSRSHPSTFDDCSIQVWLITCSKFD--TSFKGWPLKGWRLTVFASS
         FDRLK+T+DQ +R++ +L+   F E N+D  ++S + S MKRK SI IN E     S     +D  +Q+ L+TC+  +    F    L+G   + F   
Subjt:  VFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSSRSHPSTFDDCSIQVWLITCSKFD--TSFKGWPLKGWRLTVFASS

Query:  SNVDSWRLSFRLQKLVVEGFAFASFSKVGSWQLSLH
         N    RL + + + VV  +      ++ S Q+  H
Subjt:  SNVDSWRLSFRLQKLVVEGFAFASFSKVGSWQLSLH

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-2546.55Show/hide
Query:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL
        R  +TL E   R+FL                SI +V+ N+ SS  +N      S EINQR  VFDRI+PSTTR S+FQR+SM   EEE+Q  T       
Subjt:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL

Query:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS
        TF+RLS+  S+K +PSTSVFDRLK+T DQ +R++ +L+A  F E N+D K+HS + S MKRK S+ IN E   S
Subjt:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS

TYK03695.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.3e-2539.57Show/hide
Query:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL
        R+ +TL E   R+FL                SI +V  N+ SS  +N        EINQR  VFDRI+PSTTR S+FQR+SM   EEE+Q  T       
Subjt:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL

Query:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQS----SRSHPSTFDDCSIQVWLITCSKF
        TF+RLS+ AS+K +PSTS FDRLK+T+DQ +R++ +L+A  F E N+D K+HS + S MKRK  + IN +A+       SH     D S     + CS+ 
Subjt:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQS----SRSHPSTFDDCSIQVWLITCSKF

Query:  DTSFKGWP-LKGWRLTVFASSSNVDSWRLS
        D      P +   R+ +F  S+ +   R S
Subjt:  DTSFKGWP-LKGWRLTVFASSSNVDSWRLS

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.0e-2545.4Show/hide
Query:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL
        R+ +TL E   R+FL                SI +V+ N+ SS  +N      S EINQR  VFDRI+PSTTR S+FQR+SM   EEE+Q  T       
Subjt:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL

Query:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS
        TF+RLS+  S+K +PSTS FDRLK+ +DQ +R++ +L+A  F+E N+D K+HS + S MKRK S+ IN E   S
Subjt:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS

TrEMBL top hitse value%identityAlignment
A0A5A7T146 Retrotransposon gag protein3.4e-2550.35Show/hide
Query:  SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTSVFDRLKVTSDQHK
        SI +V+ N+ SS  +N      S EINQR  VFDRI+PSTT+  IFQR+S+   EEE+Q LT       TF+RLS+  S+K +PSTS FDRLK+T+DQ +
Subjt:  SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTSVFDRLKVTSDQHK

Query:  RKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS
        R++ +L+A  F E N+D K+HS + S MKRK S+ IN E   S
Subjt:  RKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS

A0A5A7TW31 Retrotransposon gag protein2.6e-2538.14Show/hide
Query:  LVTLKESSSRNFLSIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTS
        L  + E ++ +  SI +V+ N+ SS  +N      S EINQR  VFDRI+PSTT  SIFQR+SM   EEE+Q  T       TF+RLS+  S+K +PSTS
Subjt:  LVTLKESSSRNFLSIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTS

Query:  VFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSSRSHPSTFDDCSIQVWLITCSKFD--TSFKGWPLKGWRLTVFASS
         FDRLK+T+DQ +R++ +L+   F E N+D  ++S + S MKRK SI IN E     S     +D  +Q+ L+TC+  +    F    L+G   + F   
Subjt:  VFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSSRSHPSTFDDCSIQVWLITCSKFD--TSFKGWPLKGWRLTVFASS

Query:  SNVDSWRLSFRLQKLVVEGFAFASFSKVGSWQLSLH
         N    RL + + + VV  +      ++ S Q+  H
Subjt:  SNVDSWRLSFRLQKLVVEGFAFASFSKVGSWQLSLH

A0A5A7V7A0 Retrotransposon gag protein2.0e-2546.55Show/hide
Query:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL
        R  +TL E   R+FL                SI +V+ N+ SS  +N      S EINQR  VFDRI+PSTTR S+FQR+SM   EEE+Q  T       
Subjt:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL

Query:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS
        TF+RLS+  S+K +PSTSVFDRLK+T DQ +R++ +L+A  F E N+D K+HS + S MKRK S+ IN E   S
Subjt:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS

A0A5D3BX77 Retrotransposon gag protein2.6e-2539.57Show/hide
Query:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL
        R+ +TL E   R+FL                SI +V  N+ SS  +N        EINQR  VFDRI+PSTTR S+FQR+SM   EEE+Q  T       
Subjt:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL

Query:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQS----SRSHPSTFDDCSIQVWLITCSKF
        TF+RLS+ AS+K +PSTS FDRLK+T+DQ +R++ +L+A  F E N+D K+HS + S MKRK  + IN +A+       SH     D S     + CS+ 
Subjt:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQS----SRSHPSTFDDCSIQVWLITCSKF

Query:  DTSFKGWP-LKGWRLTVFASSSNVDSWRLS
        D      P +   R+ +F  S+ +   R S
Subjt:  DTSFKGWP-LKGWRLTVFASSSNVDSWRLS

A0A5D3C2C8 Retrotransposon gag protein3.4e-2545.4Show/hide
Query:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL
        R+ +TL E   R+FL                SI +V+ N+ SS  +N      S EINQR  VFDRI+PSTTR S+FQR+SM   EEE+Q  T       
Subjt:  RQLVTLKESSSRNFL----------------SIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHL

Query:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS
        TF+RLS+  S+K +PSTS FDRLK+ +DQ +R++ +L+A  F+E N+D K+HS + S MKRK S+ IN E   S
Subjt:  TFQRLSVCASRKCQPSTSVFDRLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGCTATCAATCGCCAGCTGGTAACCCTAAAAGAATCATCCTCAAGAAATTTTCTTTCCATCAAGAAAGTGGAAGAAAACTTTGCAAGTTCATGTTATATCAATGC
AGAAGAAGATGGTGGATCAAAGGAAATCAACCAAAGGAATTTTGTCTTTGACCGCATTGAGCCTTCAACTACTCGACTTTCAATCTTCCAAAGAATGAGTATGGTTGCAG
TAGAAGAAGAAGATCAAAGCTTGACGCCCGCCATCATTCTACATTTAACCTTCCAAAGGCTAAGTGTTTGTGCATCAAGAAAGTGTCAACCTTCAACATCTGTTTTTGAT
CGCCTCAAAGTAACAAGTGATCAACATAAAAGAAAGGTGGACAACTTGGAAGCTAACTTATTCAATGAAGTAAACAATGACAAGAAGCTTCACAGTACCATGTCGTCACA
TATGAAGAGGAAGTTTTCTATTCTCATAAACATAGAAGCTCAAAGTTCGAGGTCTCACCCCTCCACGTTCGACGATTGCTCCATTCAAGTTTGGCTTATCACTTGCTCCA
AGTTTGATACCTCCTTCAAAGGGTGGCCGTTGAAGGGTTGGCGGTTGACGGTATTCGCTTCATCTTCAAATGTTGACAGTTGGCGACTTTCGTTTCGTCTTCAAAAGTTG
GTAGTTGAAGGCTTCGCTTTCGCTTCATTTTCAAAAGTTGGCAGTTGGCAACTTTCGCTTCATCTTCAAAAGTTGACGGTTGACAACTTCACTTCATCTTCAAAAGTTGG
CAGTTGGAGACTTTCGCTCCATCTTCAAAAGTTGATGGTTGGCGGCCTCGCTTCTTCTTCAAAAGTTGACGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGCTATCAATCGCCAGCTGGTAACCCTAAAAGAATCATCCTCAAGAAATTTTCTTTCCATCAAGAAAGTGGAAGAAAACTTTGCAAGTTCATGTTATATCAATGC
AGAAGAAGATGGTGGATCAAAGGAAATCAACCAAAGGAATTTTGTCTTTGACCGCATTGAGCCTTCAACTACTCGACTTTCAATCTTCCAAAGAATGAGTATGGTTGCAG
TAGAAGAAGAAGATCAAAGCTTGACGCCCGCCATCATTCTACATTTAACCTTCCAAAGGCTAAGTGTTTGTGCATCAAGAAAGTGTCAACCTTCAACATCTGTTTTTGAT
CGCCTCAAAGTAACAAGTGATCAACATAAAAGAAAGGTGGACAACTTGGAAGCTAACTTATTCAATGAAGTAAACAATGACAAGAAGCTTCACAGTACCATGTCGTCACA
TATGAAGAGGAAGTTTTCTATTCTCATAAACATAGAAGCTCAAAGTTCGAGGTCTCACCCCTCCACGTTCGACGATTGCTCCATTCAAGTTTGGCTTATCACTTGCTCCA
AGTTTGATACCTCCTTCAAAGGGTGGCCGTTGAAGGGTTGGCGGTTGACGGTATTCGCTTCATCTTCAAATGTTGACAGTTGGCGACTTTCGTTTCGTCTTCAAAAGTTG
GTAGTTGAAGGCTTCGCTTTCGCTTCATTTTCAAAAGTTGGCAGTTGGCAACTTTCGCTTCATCTTCAAAAGTTGACGGTTGACAACTTCACTTCATCTTCAAAAGTTGG
CAGTTGGAGACTTTCGCTCCATCTTCAAAAGTTGATGGTTGGCGGCCTCGCTTCTTCTTCAAAAGTTGACGGGTGA
Protein sequenceShow/hide protein sequence
MLAINRQLVTLKESSSRNFLSIKKVEENFASSCYINAEEDGGSKEINQRNFVFDRIEPSTTRLSIFQRMSMVAVEEEDQSLTPAIILHLTFQRLSVCASRKCQPSTSVFD
RLKVTSDQHKRKVDNLEANLFNEVNNDKKLHSTMSSHMKRKFSILINIEAQSSRSHPSTFDDCSIQVWLITCSKFDTSFKGWPLKGWRLTVFASSSNVDSWRLSFRLQKL
VVEGFAFASFSKVGSWQLSLHLQKLTVDNFTSSSKVGSWRLSLHLQKLMVGGLASSSKVDG