; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028467 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028467
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr8:22359296..22360941
RNA-Seq ExpressionLag0028467
SyntenyLag0028467
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-0762.96Show/hide
Query:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL
        FDRLK+T DQ +R+M  L+ K F E N+D K+ S +PSRMKRK SV INTEGSL
Subjt:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-0762.96Show/hide
Query:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL
        FDRLK+T DQ +R+M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL
Subjt:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL

KAA0051997.1 hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa]1.5e-1050Show/hide
Query:  MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGS
        M  ++LH  FSF K K    ++       FDRLK+T DQ +R+M +L+VK F E N+D K+ S +PSRMKRK SV INTEG+
Subjt:  MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGS

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-0762.96Show/hide
Query:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL
        FDRLK+T DQ +R+M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL
Subjt:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL

TYK30948.1 hypothetical protein E5676_scaffold455G001730 [Cucumis melo var. makuwa]2.8e-0952.56Show/hide
Query:  MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLIN
        M  V+ HS FSF KAK LHIEE       FD LK+T DQ +R+M  L+ K F E NND K+ S + S MKRK  V IN
Subjt:  MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLIN

TrEMBL top hitse value%identityAlignment
A0A5A7SRE2 Ty3-gypsy retrotransposon protein1.3e-0762.96Show/hide
Query:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL
        FDRLK+T DQ +R+M  L+ K F E N+D K+ S +PSRMKRK SV INTEGSL
Subjt:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein1.3e-0762.96Show/hide
Query:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL
        FDRLK+T DQ +R+M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL
Subjt:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL

A0A5A7UC34 Uncharacterized protein7.1e-1150Show/hide
Query:  MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGS
        M  ++LH  FSF K K    ++       FDRLK+T DQ +R+M +L+VK F E N+D K+ S +PSRMKRK SV INTEG+
Subjt:  MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGS

A0A5A7VRG7 Retrotransposon gag protein1.3e-0762.96Show/hide
Query:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL
        FDRLK+T DQ +R+M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL
Subjt:  FDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSL

A0A5D3E580 Uncharacterized protein1.3e-0952.56Show/hide
Query:  MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLIN
        M  V+ HS FSF KAK LHIEE       FD LK+T DQ +R+M  L+ K F E NND K+ S + S MKRK  V IN
Subjt:  MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTGATCGCCTCAAAGTAACAGG
CGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCATCCCATCACGTATGAAGAGGAAGTTCT
CTGTTCTCATAAATACAGAAGGTTCCTTGAAGAAGACTTCATTCTTTCAAATTCAATGTCTCGCTCGCCTCAAGTTCGGTGTTTCCATTCACCTTAAGTTCGTTGCTCCT
CTTCTCTCCAAGTTCAAGGGTTCTTACGATGTACGCTACTTGTGTTGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGTCGCTTTGCTACAGTTCCTTCCTCAAAGTTCGA
AGGTTCTCTCTCACGTCGCTACGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCATCCAAGTTCGAGGGTTCTCACACGTCGCT
TCGATGCCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCAAGTCGTTGCGCTGCAATTCGTTCCTC
CCAAATTCGAAGGTTCTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGTCGCTACGCTGCAGTTCCTTCCTCCAAGTTCGAGGGTTCTCACG
TCGATTCGCTACAGTTCTTTCCTCCCAAATTCGAAGGTTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCAAGTCGCTGCGCTGCAATTCGTTC
CTCCCAAATTCGAAGGTTCTCACGTCGCTGCTTCGTTGCAGTTGCCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTGCTTCCTCCAAGTTCAGAGGTTC
TCAAGTCGCCCAAGTTCAAAGGTTCTCAAGTCGCTGCAGTTGCCTTCCTTCCTCCAAGCTCGAAGGTTCTCACGTCGCTTCGTTGTAGTTGCCTCTTCCTACCTCCAAAG
CAAAGTTCGAAGGTGTGCCTCTTCCTACCTCCAAAGCAAAGTTCGAACTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTGGTGCTCTCACGCGCTCCGCTGCAGTTC
CTTCCTCCAAGTTCGAAGGATTCATTCCTCCAAATTCAAAGGTTGCGCTTCGCTGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTGATCGCCTCAAAGTAACAGG
CGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCATCCCATCACGTATGAAGAGGAAGTTCT
CTGTTCTCATAAATACAGAAGGTTCCTTGAAGAAGACTTCATTCTTTCAAATTCAATGTCTCGCTCGCCTCAAGTTCGGTGTTTCCATTCACCTTAAGTTCGTTGCTCCT
CTTCTCTCCAAGTTCAAGGGTTCTTACGATGTACGCTACTTGTGTTGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGTCGCTTTGCTACAGTTCCTTCCTCAAAGTTCGA
AGGTTCTCTCTCACGTCGCTACGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCATCCAAGTTCGAGGGTTCTCACACGTCGCT
TCGATGCCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCAAGTCGTTGCGCTGCAATTCGTTCCTC
CCAAATTCGAAGGTTCTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGTCGCTACGCTGCAGTTCCTTCCTCCAAGTTCGAGGGTTCTCACG
TCGATTCGCTACAGTTCTTTCCTCCCAAATTCGAAGGTTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCAAGTCGCTGCGCTGCAATTCGTTC
CTCCCAAATTCGAAGGTTCTCACGTCGCTGCTTCGTTGCAGTTGCCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTGCTTCCTCCAAGTTCAGAGGTTC
TCAAGTCGCCCAAGTTCAAAGGTTCTCAAGTCGCTGCAGTTGCCTTCCTTCCTCCAAGCTCGAAGGTTCTCACGTCGCTTCGTTGTAGTTGCCTCTTCCTACCTCCAAAG
CAAAGTTCGAAGGTGTGCCTCTTCCTACCTCCAAAGCAAAGTTCGAACTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTGGTGCTCTCACGCGCTCCGCTGCAGTTC
CTTCCTCCAAGTTCGAAGGATTCATTCCTCCAAATTCAAAGGTTGCGCTTCGCTGCAGTTAG
Protein sequenceShow/hide protein sequence
MFGVHLHSTFSFPKAKCLHIEEKSTFDICFDRLKVTGDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKKTSFFQIQCLARLKFGVSIHLKFVAP
LLSKFKGSYDVRYLCCSFLKVRRFSRRFATVPSSKFEGSLSRRYAAVPSSKFKGSHVASLQFLHPSSRVLTRRFDASSFLPNSKVLSRASLQFLPPSSKVLKSLRCNSFL
PNSKVLSRASLQFLPPSLKVLTSLRCSSFLQVRGFSRRFATVLSSQIRRFLTRFAAVPSSKFKGSQVAALQFVPPKFEGSHVAASLQLPSSKFEGSHALRCSCFLQVQRF
SSRPSSKVLKSLQLPSFLQARRFSRRFVVVASSYLQSKVRRCASSYLQSKVRTPLQFLPPSSKVGALTRSAAVPSSKFEGFIPPNSKVALRCS