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Lag0028476 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028476
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPMD domain-containing protein
Genome locationchr8:22808785..22809518
RNA-Seq ExpressionLag0028476
SyntenyLag0028476
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042086.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-1837.71Show/hide
Query:  KQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHY
        K +K + L +LIIQMEFLS  L  +        SL+ + +   SL      F   +P+LANIY GL QI+ ++ S G   ACF +HYV+ WL  YFNTHY
Subjt:  KQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHY

Query:  AVSEKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI
             +RG  M+EF      N         +    ++Y+G  +S H      NK  +L DD  L +W+ SFF+SI
Subjt:  AVSEKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]6.9e-1755.42Show/hide
Query:  VSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFS
        +S RP+VF V SL      F  +IPVLANIY GL QI+ ++ S G    CF +HYV+ WLA YFNTHY  S  +RGP MVEFS
Subjt:  VSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFS

KAA0060136.1 uncharacterized protein E6C27_scaffold39G00570 [Cucumis melo var. makuwa]3.6e-1842.55Show/hide
Query:  SFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFSKR--VELNTLIILRL
        SF+  R +VF V SL      F  +IP+LANIY GL QI+  + S G   ACF +HYV+ WLA YFNT+Y     +RGP MVEFS     +  T +  R 
Subjt:  SFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFSKR--VELNTLIILRL

Query:  VYIFIKVNMYRGMRISSHNKGMVLTDDDKLTFWHFSFFLSI
         +I ++  +     + + NK  +LTDD  L  W+ SFF+SI
Subjt:  VYIFIKVNMYRGMRISSHNKGMVLTDDDKLTFWHFSFFLSI

TYK18029.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-1837.71Show/hide
Query:  KQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHY
        K +K + L +LIIQMEFLS  L  +        SL+ + +   SL      F   +P+LANIY GL QI+ ++ S G   ACF +HYV+ WL  YFNTHY
Subjt:  KQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHY

Query:  AVSEKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI
             +RG  M+EF      N         +    ++Y+G  +S H      NK  +L DD  L +W+ SFF+SI
Subjt:  AVSEKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]2.7e-2143.36Show/hide
Query:  VSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFSKRVELNTLIILRLVYIF
        +SLRP+VF V SL      F  ++PVLANIY GL Q++ ++ S G   ACF +HYV+ WLA YFNTHY     +RGP MVEFS          L      
Subjt:  VSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFSKRVELNTLIILRLVYIF

Query:  IKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI
         + ++++G  +S H      NK  +LTDD +L  W+ SFF+SI
Subjt:  IKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI

TrEMBL top hitse value%identityAlignment
A0A5A7SRI5 Uncharacterized protein5.7e-1739.31Show/hide
Query:  VSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFSKRVELNTLIILRLVYIF
        +SLRP+ F V SL      F  +IPVLANIY  L QI+ +S S G   ACF +HYV+ WLA YFNTHY     +RGP MVEFS   E N+   L  V   
Subjt:  VSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFSKRVELNTLIILRLVYIF

Query:  IKVNMYRGMRISSHNKGMVLTDDDKLTFWHFSFFLSIDHASYLPD
          + +   M    +     L   + +T ++ +++L+  H  YL +
Subjt:  IKVNMYRGMRISSHNKGMVLTDDDKLTFWHFSFFLSIDHASYLPD

A0A5A7TJC9 Reverse transcriptase3.9e-1837.71Show/hide
Query:  KQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHY
        K +K + L +LIIQMEFLS  L  +        SL+ + +   SL      F   +P+LANIY GL QI+ ++ S G   ACF +HYV+ WL  YFNTHY
Subjt:  KQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHY

Query:  AVSEKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI
             +RG  M+EF      N         +    ++Y+G  +S H      NK  +L DD  L +W+ SFF+SI
Subjt:  AVSEKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI

A0A5A7U4C3 Uncharacterized protein3.3e-1755.42Show/hide
Query:  VSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFS
        +S RP+VF V SL      F  +IPVLANIY GL QI+ ++ S G    CF +HYV+ WLA YFNTHY  S  +RGP MVEFS
Subjt:  VSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFS

A0A5A7V0Y4 Uncharacterized protein1.8e-1842.55Show/hide
Query:  SFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFSKR--VELNTLIILRL
        SF+  R +VF V SL      F  +IP+LANIY GL QI+  + S G   ACF +HYV+ WLA YFNT+Y     +RGP MVEFS     +  T +  R 
Subjt:  SFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVSEKVRGPMMVEFSKR--VELNTLIILRL

Query:  VYIFIKVNMYRGMRISSHNKGMVLTDDDKLTFWHFSFFLSI
         +I ++  +     + + NK  +LTDD  L  W+ SFF+SI
Subjt:  VYIFIKVNMYRGMRISSHNKGMVLTDDDKLTFWHFSFFLSI

A0A5D3D3U4 Reverse transcriptase3.9e-1837.71Show/hide
Query:  KQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHY
        K +K + L +LIIQMEFLS  L  +        SL+ + +   SL      F   +P+LANIY GL QI+ ++ S G   ACF +HYV+ WL  YFNTHY
Subjt:  KQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHY

Query:  AVSEKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI
             +RG  M+EF      N         +    ++Y+G  +S H      NK  +L DD  L +W+ SFF+SI
Subjt:  AVSEKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSH------NKGMVLTDDDKLTFWHFSFFLSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGCCTCCTGCTTGAAAAGCAAAGAAAGCTAGTCGTCCTCGTTCGACTCATAATCCAAATGGAGTTCCTATCAAGTATTCTAAATGGTCTTAGAGAGAACTCGAG
TTCTTTCGTTTCTCTTCGTCCAAAGGTCTTCAATGTTGTAAGCCTTTCTGGCAGAAGGCTATGCTTTTATTTTTCTATCCCAGTTTTGGCTAATATCTACCATGGATTGG
GCCAGATTTATAAAACGTCTCCTTCGACAGGACGTTTAGAGGCTTGTTTTCTAGTGCATTATGTTTACGCTTGGCTTGCTTATTATTTTAATACGCATTATGCAGTTTCA
GAAAAAGTTAGAGGCCCAATGATGGTTGAGTTTTCAAAGAGGGTGGAGCTAAATACTTTGATAATTTTGAGGCTCGTGTACATATTCATAAAGGTAAATATGTATCGTGG
TATGCGAATCTCCTCCCACAATAAAGGCATGGTTCTGACAGATGATGACAAGCTAACATTTTGGCACTTCTCATTCTTTCTAAGTATTGATCATGCTTCTTATCTTCCCG
ATGTGGGCCTTCGTTGGTCATTGAATCTTACAATCCTTGTCGATTTAGCCAACAATTTGGATTTTACCAAGACATGCCAAACGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGCCTCCTGCTTGAAAAGCAAAGAAAGCTAGTCGTCCTCGTTCGACTCATAATCCAAATGGAGTTCCTATCAAGTATTCTAAATGGTCTTAGAGAGAACTCGAG
TTCTTTCGTTTCTCTTCGTCCAAAGGTCTTCAATGTTGTAAGCCTTTCTGGCAGAAGGCTATGCTTTTATTTTTCTATCCCAGTTTTGGCTAATATCTACCATGGATTGG
GCCAGATTTATAAAACGTCTCCTTCGACAGGACGTTTAGAGGCTTGTTTTCTAGTGCATTATGTTTACGCTTGGCTTGCTTATTATTTTAATACGCATTATGCAGTTTCA
GAAAAAGTTAGAGGCCCAATGATGGTTGAGTTTTCAAAGAGGGTGGAGCTAAATACTTTGATAATTTTGAGGCTCGTGTACATATTCATAAAGGTAAATATGTATCGTGG
TATGCGAATCTCCTCCCACAATAAAGGCATGGTTCTGACAGATGATGACAAGCTAACATTTTGGCACTTCTCATTCTTTCTAAGTATTGATCATGCTTCTTATCTTCCCG
ATGTGGGCCTTCGTTGGTCATTGAATCTTACAATCCTTGTCGATTTAGCCAACAATTTGGATTTTACCAAGACATGCCAAACGATCTAA
Protein sequenceShow/hide protein sequence
MRSLLLEKQRKLVVLVRLIIQMEFLSSILNGLRENSSSFVSLRPKVFNVVSLSGRRLCFYFSIPVLANIYHGLGQIYKTSPSTGRLEACFLVHYVYAWLAYYFNTHYAVS
EKVRGPMMVEFSKRVELNTLIILRLVYIFIKVNMYRGMRISSHNKGMVLTDDDKLTFWHFSFFLSIDHASYLPDVGLRWSLNLTILVDLANNLDFTKTCQTI