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Lag0028482 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028482
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr8:23198353..23205561
RNA-Seq ExpressionLag0028482
SyntenyLag0028482
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-0543.24Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
        E+ D+  I DS  TNHV SSF+G +SWQQL+  E+T++VGT  VV A+A+G ++     L + +  LL+   +V
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
KAA0045330.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]4.9e-0550Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQ
        E+ D+  I DS  TNHV SSF+G +SW+QL+  E+T++VGT  VV A+A+G ++
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQ
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-0541.89Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
        E+ D+  I DS  TNHV SSF+G +SW+QL+  E+T++VGT  VV A+A+G ++     L + +  LL+   +V
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-0541.89Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
        E+ D+  I DS  TNHV SSF+G +SW+QL+  E+T++VGT  VV A+A+G ++     L + +  LL+   +V
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-0541.89Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
        E+ D+  I DS  TNHV SSF+G +SW+QL+  E+T++VGT  VV A+A+G ++     L + +  LL+   +V
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.1e-0541.89Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
        E+ D+  I DS  TNHV SSF+G +SW+QL+  E+T++VGT  VV A+A+G ++     L + +  LL+   +V
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
A0A5A7TQ86 Retrotransposon protein, putative, Ty1-copia subclass2.4e-0550Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQ
        E+ D+  I DS  TNHV SSF+G +SW+QL+  E+T++VGT  VV A+A+G ++
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQ
A0A5A7TU93 Gag/pol protein1.1e-0543.24Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
        E+ D+  I DS  TNHV SSF+G +SWQQL+  E+T++VGT  VV A+A+G ++     L + +  LL+   +V
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
A0A5A7V4M1 Gag/pol protein3.1e-0541.89Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
        E+ D+  I DS  TNHV SSF+G +SW+QL+  E+T++VGT  VV A+A+G ++     L + +  LL+   +V
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
A0A5D3CPJ6 Gag/pol protein3.1e-0541.89Show/hide
Query:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
        E+ D+  I DS  TNHV SSF+G +SW+QL+  E+T++VGT  VV A+A+G ++     L + +  LL+   +V
Subjt:  EDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAGGCCCGAATTTATGCTCAAAAACCGCGCCAGGAAGCTTCAGGAAAACAGCGTCGAGACGCTTTCCCCTAGCATCTCACGCTGTGCGAGCTGCCCAAGAAGA
CTACGACGCTGTGACGATATTTGATTCAAGAGTCACGAATCACGTTAGTTCTTCTTTTAAAGGAACAAATTCCTGGCAACAGCTTGATGCTGATGAGATAACTCTCAAAG
TTGGGACTAGAGAGGTTGTCTTGGCTGTAGCAATGGGGAACGTTCAAAACATCAATAAAGAGTTGTTGATAAGTCAACAAAGGTTGTTGATGAGGCTAACCTTTGTTGAT
GGGACCGTTATAACTGCGACGAAGCCTTGCAAACACCACCACTATGGCTACACTGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGCTTTTAGGTCTCGA
CAATATAGAAAAGGTAACTGCTTGTGAAGCTGCGATAGAGACTGCATGGCTTAGGAAGTTCTTGACTGATTTGGAAGGTGCTCCAAATCGTCGAGACGCTGTCTCAAAAC
ATGCGTATTTTGGAAAGGAAATTACGCAGAGTCGAGACGCTAAGGTCGCAGCGTCTCGACGCTGCGACGATTTCGCGCCTATTCTGATATGGAATGCCAGCGTCGAGACG
CTCAAGGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAGGCCCGAATTTATGCTCAAAAACCGCGCCAGGAAGCTTCAGGAAAACAGCGTCGAGACGCTTTCCCCTAGCATCTCACGCTGTGCGAGCTGCCCAAGAAGA
CTACGACGCTGTGACGATATTTGATTCAAGAGTCACGAATCACGTTAGTTCTTCTTTTAAAGGAACAAATTCCTGGCAACAGCTTGATGCTGATGAGATAACTCTCAAAG
TTGGGACTAGAGAGGTTGTCTTGGCTGTAGCAATGGGGAACGTTCAAAACATCAATAAAGAGTTGTTGATAAGTCAACAAAGGTTGTTGATGAGGCTAACCTTTGTTGAT
GGGACCGTTATAACTGCGACGAAGCCTTGCAAACACCACCACTATGGCTACACTGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGCTTTTAGGTCTCGA
CAATATAGAAAAGGTAACTGCTTGTGAAGCTGCGATAGAGACTGCATGGCTTAGGAAGTTCTTGACTGATTTGGAAGGTGCTCCAAATCGTCGAGACGCTGTCTCAAAAC
ATGCGTATTTTGGAAAGGAAATTACGCAGAGTCGAGACGCTAAGGTCGCAGCGTCTCGACGCTGCGACGATTTCGCGCCTATTCTGATATGGAATGCCAGCGTCGAGACG
CTCAAGGGCTAG
Protein sequenceShow/hide protein sequence
MEGGPNLCSKTAPGSFRKTASRRFPLASHAVRAAQEDYDAVTIFDSRVTNHVSSSFKGTNSWQQLDADEITLKVGTREVVLAVAMGNVQNINKELLISQQRLLMRLTFVD
GTVITATKPCKHHHYGYTGMTLRLLEAGDWWELLGLDNIEKVTACEAAIETAWLRKFLTDLEGAPNRRDAVSKHAYFGKEITQSRDAKVAASRRCDDFAPILIWNASVET
LKG