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Lag0028495 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028495
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr8:23588733..23591145
RNA-Seq ExpressionLag0028495
SyntenyLag0028495
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEY07105.1 hypothetical protein [Tanacetum cinerariifolium]4.5e-3276.47Show/hide
Query:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        ++++LLDKGHI+ SLSPC +PALLTPKKDGSWRMCVDSR INKIT++Y+F IP ++DLLDQLGGA +FSK DLKSGYHQIRIR G
Subjt:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

KAG5544947.1 hypothetical protein RHGRI_017420 [Rhododendron griersonianum]2.0e-3266.34Show/hide
Query:  IPLEVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLGMNGRQLLRPMKA
        I  +V DLL+K +I+ SLSPC +P LLTPKKDGSWRMCVDSRAINKIT+KY+F IP ++D+LD L G+ +FSK DL+SGYHQIR+R  MNG++L RP+ A
Subjt:  IPLEVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLGMNGRQLLRPMKA

Query:  F
        F
Subjt:  F

KAG5544950.1 hypothetical protein RHGRI_017420 [Rhododendron griersonianum]2.0e-3266.34Show/hide
Query:  IPLEVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLGMNGRQLLRPMKA
        I  +V DLL+K +I+ SLSPC +P LLTPKKDGSWRMCVDSRAINKIT+KY+F IP ++D+LD L G+ +FSK DL+SGYHQIR+R  MNG++L RP+ A
Subjt:  IPLEVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLGMNGRQLLRPMKA

Query:  F
        F
Subjt:  F

PWA63920.1 reverse transcriptase domain-containing protein [Artemisia annua]4.5e-3279.76Show/hide
Query:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        V++LL KGHI+ SLSPC +PALLTPKKDGSWRMCVDSRAINKITV+Y+F IP ++DLLDQLGGA +FSK DLKSGYHQIRIR+G
Subjt:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

XP_037426242.1 uncharacterized protein LOC119291565 [Triticum dicoccoides]4.5e-3277.65Show/hide
Query:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        +VQ+LLDKG IQPSLSPC +PALLTPKKDGSWRMCVDSRAINKIT+KY+F IP ++D+LD L GA +FSK DLKSGYHQ+RIR G
Subjt:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

TrEMBL top hitse value%identityAlignment
A0A2U1MRQ8 Reverse transcriptase2.2e-3279.76Show/hide
Query:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        V++LL KGHI+ SLSPC +PALLTPKKDGSWRMCVDSRAINKITV+Y+F IP ++DLLDQLGGA +FSK DLKSGYHQIRIR+G
Subjt:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

A0A438GRM7 Transposon Ty3-G Gag-Pol polyprotein2.4e-3172.53Show/hide
Query:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLGMNGRQL
        +V +LL KG I+ SLSPC +PALLTPKKDGSWRMCVDSRAINKIT+KY+F IP ++D+LD + G+ IFSK DL+SGYHQIRIR GMNGR L
Subjt:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLGMNGRQL

A0A5D3DIC3 RNA-directed DNA polymerase-like protein2.4e-3182.14Show/hide
Query:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        ++DLL KGH +PSLSPC  PALLTPKKDGSWRMCVDSRAIN+ITVKY+F IP I DLLDQLG ATIFSK DL+SGYHQIRIRLG
Subjt:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

A0A5D3DYI6 RNA-directed DNA polymerase-like protein2.4e-3178.57Show/hide
Query:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        +++LL KGHI+PSLSPC +PALLTPKKDGSWRMCVD+RAIN+I VKY+F IP I DLLDQLG A IFSK DLKSGYHQIRIR G
Subjt:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

A0A6L2JRM1 Putative nucleotidyltransferase, ribonuclease H3.1e-3177.38Show/hide
Query:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRL
        ++++LL KGHI  SLSPC +PALLTPKKDGSWRMCVDSRAINKITV+Y F IP ++DLLDQLGGA +FSK DLKSGYH IRIRL
Subjt:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRL

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein5.3e-1241.18Show/hide
Query:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        E+   L  G I+ S +    P +  PKK+G+ RM VD + +NK      + +P I  LL ++ G+TIF+K DLKS YH IR+R G
Subjt:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

P10394 Retrovirus-related Pol polyprotein from transposon 4122.2e-1341Show/hide
Query:  HDSTVAIPLEVQDLLDKGHIQPSLSPCVIPALLTPKKDG------SWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        H     I  +VQ L+    ++PS+S    P LL PKK         WR+ +D R INK  +  +F +P I+D+LDQLG A  FS  DL SG+HQI +  G
Subjt:  HDSTVAIPLEVQDLLDKGHIQPSLSPCVIPALLTPKKDG------SWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.3e-1854.43Show/hide
Query:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQI
        VQ LLD   I PS SPC  P +L PKKDG++R+CVD R +NK T+   F +P I++LL ++G A IF+  DL SGYHQI
Subjt:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQI

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.3e-1854.43Show/hide
Query:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQI
        VQ LLD   I PS SPC  P +L PKKDG++R+CVD R +NK T+   F +P I++LL ++G A IF+  DL SGYHQI
Subjt:  VQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQI

Q9UR07 Transposon Tf2-11 polyprotein5.3e-1241.18Show/hide
Query:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG
        E+   L  G I+ S +    P +  PKK+G+ RM VD + +NK      + +P I  LL ++ G+TIF+K DLKS YH IR+R G
Subjt:  EVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACCAAGAAAGTCTCGACCAACGTAGGTGGAGATTCATCGTCGGTTGGAAAAGAGACGGAAACTACCACCGTCCTCTCACCACAAGAATCAACCGTACGCTTGCT
GTCGGTTGAACAAGATACAAAAATCTTGAAAGACGACGTGCGTGAGATAAAGAAGATCTTAGAGATGATATGTGAAAAATTGGACTGCGGAATGGATCAACAAGCTTTTG
ACCCGAAAATGCATACAATTGTGGAAAGGAGACATCAAGATCATCAAAAGGAAGAATTTAGAACAAAACAGTGGTTAGTTGTTAAACATTTCACTAATCATGATTCTACT
GTTGCAATTCCTTTGGAGGTGCAAGACCTACTCGATAAAGGACACATCCAACCAAGCTTAAGTCCTTGTGTGATTCCAGCCCTCTTAACTCCAAAGAAAGATGGGAGTTG
GCGTATGTGTGTGGATAGTAGGGCAATCAATAAAATAACAGTGAAGTATCAGTTCGCAATTCCATGGATAAATGACCTTTTGGATCAACTTGGAGGTGCAACAATCTTCT
CAAAGACAGATTTAAAGAGTGGTTATCACCAAATCCGAATACGGCTGGGGATGAATGGAAGACAACTTTTAAGACCAATGAAGGCTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACCAAGAAAGTCTCGACCAACGTAGGTGGAGATTCATCGTCGGTTGGAAAAGAGACGGAAACTACCACCGTCCTCTCACCACAAGAATCAACCGTACGCTTGCT
GTCGGTTGAACAAGATACAAAAATCTTGAAAGACGACGTGCGTGAGATAAAGAAGATCTTAGAGATGATATGTGAAAAATTGGACTGCGGAATGGATCAACAAGCTTTTG
ACCCGAAAATGCATACAATTGTGGAAAGGAGACATCAAGATCATCAAAAGGAAGAATTTAGAACAAAACAGTGGTTAGTTGTTAAACATTTCACTAATCATGATTCTACT
GTTGCAATTCCTTTGGAGGTGCAAGACCTACTCGATAAAGGACACATCCAACCAAGCTTAAGTCCTTGTGTGATTCCAGCCCTCTTAACTCCAAAGAAAGATGGGAGTTG
GCGTATGTGTGTGGATAGTAGGGCAATCAATAAAATAACAGTGAAGTATCAGTTCGCAATTCCATGGATAAATGACCTTTTGGATCAACTTGGAGGTGCAACAATCTTCT
CAAAGACAGATTTAAAGAGTGGTTATCACCAAATCCGAATACGGCTGGGGATGAATGGAAGACAACTTTTAAGACCAATGAAGGCTTTTTGA
Protein sequenceShow/hide protein sequence
MTTKKVSTNVGGDSSSVGKETETTTVLSPQESTVRLLSVEQDTKILKDDVREIKKILEMICEKLDCGMDQQAFDPKMHTIVERRHQDHQKEEFRTKQWLVVKHFTNHDST
VAIPLEVQDLLDKGHIQPSLSPCVIPALLTPKKDGSWRMCVDSRAINKITVKYQFAIPWINDLLDQLGGATIFSKTDLKSGYHQIRIRLGMNGRQLLRPMKAF