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Lag0028515 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028515
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:24132284..24132865
RNA-Seq ExpressionLag0028515
SyntenyLag0028515
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2555554.1 hypothetical protein F2Q68_00015081 [Brassica cretica]5.7e-1036Show/hide
Query:  TDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGSFA
        T AA N S+  +G   + +       +     +D+  +PL  E  AL  G+     + LT+  +FSD+ TLI+ IN DM+I  E++  I  IQQ+  +F 
Subjt:  TDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGSFA

Query:  DLSFHHVSRHCNRKADFLAKHALSS
        D+SF H+SR+ N +AD LAK+A+++
Subjt:  DLSFHHVSRHCNRKADFLAKHALSS

KAF3584566.1 hypothetical protein F2Q69_00028822 [Brassica cretica]7.4e-1036Show/hide
Query:  TDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGSFA
        TDAA N S+  +G   + +       +     +D   +PL  E  AL  G+     + L +  +FSD+ TLI+ IN DM+I  E++  I  IQQ+  +F 
Subjt:  TDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGSFA

Query:  DLSFHHVSRHCNRKADFLAKHALSS
        D+SF H+SR+ N +AD LAK+A+++
Subjt:  DLSFHHVSRHCNRKADFLAKHALSS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.2e-0930.34Show/hide
Query:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS
        L TDAA       + FG I+      + +A         +PL  E+  ++ G++       T   V SDS+  I++I  ++    +  +W+++IQ +   
Subjt:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS

Query:  FADLSFHHVSRHCNRKADFLAKHALSS-SSSILWLGNYPYELVSM
        FA +SF H SR CNR A  LAK  ++S S++  WL N+P  L+ +
Subjt:  FADLSFHHVSRHCNRKADFLAKHALSS-SSSILWLGNYPYELVSM

XP_024033533.1 uncharacterized protein LOC112095662 [Citrus clementina]8.2e-0928.37Show/hide
Query:  DAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGSFAD
        DAAV+  +  +G G+++    GQ+  A     + +      E  A+  G+ +  +   T   V +D   +  + N  +   TE++  I +IQ  R  F  
Subjt:  DAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGSFAD

Query:  LSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYPYELVSM
        + F HV R CN  A  LAK AL SS S++W   +P +++ +
Subjt:  LSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYPYELVSM

XP_030483444.1 uncharacterized protein LOC115700033 [Cannabis sativa]1.7e-0933.33Show/hide
Query:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS
        LY DAA++T     GFG+I+   D Q+ +A+        +    E  AL+ G+   Q + L   RVFSDS++L+  + G      E+      I+ +  S
Subjt:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS

Query:  FADLSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYP
        F  +S  HVSR+ N +A  LAKHAL   + + W+   P
Subjt:  FADLSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYP

TrEMBL top hitse value%identityAlignment
A0A3P6C4R9 RNase H domain-containing protein (Fragment)2.0e-0833.57Show/hide
Query:  SGVQSSSGIMAFLPDLYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEIST
        +G   S+  +   P   +DAA N     +G   I+ G D +  +     ++   +PL  E  AL   I     + L+  RVFSD+ITLI+ IN DM+ + 
Subjt:  SGVQSSSGIMAFLPDLYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEIST

Query:  EVFHWIVQIQQMRGSFADLSFHHVSRHCNRKADFLAKHAL
        E++  +  IQ++  +F  +SF H++R  N +AD LAK AL
Subjt:  EVFHWIVQIQQMRGSFADLSFHHVSRHCNRKADFLAKHAL

A0A6J0JJC7 uncharacterized protein LOC1088080266.8e-0934.92Show/hide
Query:  TDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGSFA
        +DAA ++    +GF  I     G I       +D   +PL  E  AL   +      +++  ++FSD+ TLI+ I+ DM++S E+F  +  IQQM  +F 
Subjt:  TDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGSFA

Query:  DLSFHHVSRHCNRKADFLAKHALSSS
         ++F+H+SR  N +AD LAK AL  S
Subjt:  DLSFHHVSRHCNRKADFLAKHALSSS

A0A6J1DX30 uncharacterized protein LOC1110248741.0e-0930.34Show/hide
Query:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS
        L TDAA       + FG I+      + +A         +PL  E+  ++ G++       T   V SDS+  I++I  ++    +  +W+++IQ +   
Subjt:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS

Query:  FADLSFHHVSRHCNRKADFLAKHALSS-SSSILWLGNYPYELVSM
        FA +SF H SR CNR A  LAK  ++S S++  WL N+P  L+ +
Subjt:  FADLSFHHVSRHCNRKADFLAKHALSS-SSSILWLGNYPYELVSM

A0A803PC16 Uncharacterized protein1.5e-0830.99Show/hide
Query:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS
        L TDAA+NT    SGFG+++    GQI +AM        TP   E  AL+H ++ ++ +QL    + +DS++++K ++   E+ ++    +  I  +  +
Subjt:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS

Query:  FADLSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYPYELV
        F      HV R  N  A  LA++ALS  S+  W+   P  L+
Subjt:  FADLSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYPYELV

A0A803QJ22 Uncharacterized protein4.0e-0930.99Show/hide
Query:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS
        L TDAA+NT    SGFG+++    GQI +AM        TP   E  AL+H ++ ++ +QL    + +DS++++K ++   E+ ++    +  I  +  +
Subjt:  LYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMINGDMEISTEVFHWIVQIQQMRGS

Query:  FADLSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYPYELV
        F      HV R  N  A  LA++ALS  S+  W    P  L+
Subjt:  FADLSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYPYELV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTGGGATTTCATCCAGCTTTCTAGTGAAGCACTCTTGGTTGAGCAAGTAAGTGGCGTGCAAAGCAGTAGTGGCATCATGGCTTTTCTTCCGGATTTATACACGGA
CGCTGCGGTAAACACTTCGGCGGGAGGATCCGGCTTTGGATCAATCGTTTTAGGTGGTGATGGTCAGATTTGCAGTGCTATGGAATTCTTCGAGGACATGCGCCACACCC
CTTTAGCAGGTGAAGTGAATGCCTTAATCCATGGGATTCGGTTATTGCAACAGATACAACTTACGAGAGCTCGCGTATTTTCGGACTCGATTACATTGATCAAAATGATT
AATGGGGATATGGAGATTTCTACCGAGGTATTTCATTGGATCGTGCAAATTCAACAGATGCGTGGCTCCTTTGCCGATTTATCTTTCCATCATGTGTCTCGGCATTGTAA
TAGGAAAGCGGATTTTTTGGCGAAACATGCTCTTTCTTCTAGTAGCTCTATACTTTGGTTAGGAAACTATCCATATGAGTTAGTGTCAATGAGTAACTCAACTCATTGCA
AATGTATTGTTTCGAATTCTCTTGTGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTGGGATTTCATCCAGCTTTCTAGTGAAGCACTCTTGGTTGAGCAAGTAAGTGGCGTGCAAAGCAGTAGTGGCATCATGGCTTTTCTTCCGGATTTATACACGGA
CGCTGCGGTAAACACTTCGGCGGGAGGATCCGGCTTTGGATCAATCGTTTTAGGTGGTGATGGTCAGATTTGCAGTGCTATGGAATTCTTCGAGGACATGCGCCACACCC
CTTTAGCAGGTGAAGTGAATGCCTTAATCCATGGGATTCGGTTATTGCAACAGATACAACTTACGAGAGCTCGCGTATTTTCGGACTCGATTACATTGATCAAAATGATT
AATGGGGATATGGAGATTTCTACCGAGGTATTTCATTGGATCGTGCAAATTCAACAGATGCGTGGCTCCTTTGCCGATTTATCTTTCCATCATGTGTCTCGGCATTGTAA
TAGGAAAGCGGATTTTTTGGCGAAACATGCTCTTTCTTCTAGTAGCTCTATACTTTGGTTAGGAAACTATCCATATGAGTTAGTGTCAATGAGTAACTCAACTCATTGCA
AATGTATTGTTTCGAATTCTCTTGTGAGTTAA
Protein sequenceShow/hide protein sequence
MFWDFIQLSSEALLVEQVSGVQSSSGIMAFLPDLYTDAAVNTSAGGSGFGSIVLGGDGQICSAMEFFEDMRHTPLAGEVNALIHGIRLLQQIQLTRARVFSDSITLIKMI
NGDMEISTEVFHWIVQIQQMRGSFADLSFHHVSRHCNRKADFLAKHALSSSSSILWLGNYPYELVSMSNSTHCKCIVSNSLVS