; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028518 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028518
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-directed DNA polymerase
Genome locationchr8:24148840..24150714
RNA-Seq ExpressionLag0028518
SyntenyLag0028518
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035681.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2941.59Show/hide
Query:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEE----QLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGK
        +L+AR NL E+ Q Q+AR+I G +  IK+++ L +  VL+EA+SLAET+EE    +L  +  +  +  N  +KQS+   K D      EQ STS V+KGK
Subjt:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEE----QLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGK

Query:  NPVAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDIN--DDNEGEEEIEYAKGDEGEQLNCVVQRI
                 D + T  +  +    K+ N Y +P+  K +RCG+ GH+SN C  RK IA+ E+   ED  ++  D  E EEE E  + D+G++++C+VQR+
Subjt:  NPVAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDIN--DDNEGEEEIEYAKGDEGEQLNCVVQRI

Query:  LLTPKIETHPQRHSLFRTKCTIMGKI
        L+TPK ET+PQ HSLF+T+CTI GK+
Subjt:  LLTPKIETHPQRHSLFRTKCTIMGKI

TYK30863.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]1.6e-2941.78Show/hide
Query:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEE----QLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGK
        +L AR NL E+ Q Q+AR+I G +  IK+++ L +  VL+EA+SLAET+EE    +L  +  +  +  N  +KQS+   K D      EQ STS V+KGK
Subjt:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEE----QLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGK

Query:  NPVAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDIN-DDNEGEEEIEYAKGDEGEQLNCVVQRIL
                 D + T  +  +    K+ N Y +P+  K +RCG+ GH+SN C  RK IA+ E+   ED  ++  D E EEE E  + D+G++++C+VQR+L
Subjt:  NPVAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDIN-DDNEGEEEIEYAKGDEGEQLNCVVQRIL

Query:  LTPKIETHPQRHSLFRTKCTIMGKI
        +TPK ET+PQ HSLF+T+CTI GK+
Subjt:  LTPKIETHPQRHSLFRTKCTIMGKI

XP_020259159.1 uncharacterized protein LOC109835598 [Asparagus officinalis]1.5e-2739.01Show/hide
Query:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNP--
        +L++RNNL ES  QQ++RYI G +  I+D+++LQ    LA+ VSLAE +E QL                   +W   D +   F + +T    KGK P  
Subjt:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNP--

Query:  -VAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLT
          A KP                    NPYAKP P K YRCG+ GH SNQCP R  + +++   +ED+D + D++ + +      D+GEQL+CVV+R+LL 
Subjt:  -VAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLT

Query:  PKIETHPQRHSLFRTKCTIMGKI
        PK E  PQRH++FRT+CT+  KI
Subjt:  PKIETHPQRHSLFRTKCTIMGKI

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]8.7e-2838.01Show/hide
Query:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVA
        +L+AR NL E+ Q QVAR++ G +  IK+++ LQ    L+EA+S AET+EE +         ++++   +   W    +     +Q STS   KGK    
Subjt:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVA

Query:  YKPIGDDRLTENQPNNQDLRKS-VNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPK
           I +  +   +   Q  + S  N Y++P+  K +RCG+ GH+SN CP RK IAI EE     +   D  E EEE E  + D+GE+++CV+QR+L+TPK
Subjt:  YKPIGDDRLTENQPNNQDLRKS-VNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPK

Query:  IETHPQRHSLFRTKCTIMGKI
         E + QRH LF+T+CTI G++
Subjt:  IETHPQRHSLFRTKCTIMGKI

XP_031745468.1 uncharacterized protein LOC116405837 [Cucumis sativus]1.9e-2737.56Show/hide
Query:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVA
        +L+AR NL E+ Q QVAR++ G +  IK+++ LQ    L+EA+S AET+EE +         ++++   +   W    +     +Q STS   KGK    
Subjt:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVA

Query:  YKPIGDDRLTENQPNNQDLRKS-VNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPK
           I +  +   +   Q  + S  N Y++P+  K +RCG+ GH+SN CP RK IAI E+     +   D  E EEE E  + D+GE+++CV+QR+L+TPK
Subjt:  YKPIGDDRLTENQPNNQDLRKS-VNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPK

Query:  IETHPQRHSLFRTKCTIMGKI
         E + QRH LF+T+CTI G++
Subjt:  IETHPQRHSLFRTKCTIMGKI

TrEMBL top hitse value%identityAlignment
A0A5A7T256 Reverse transcriptase1.0e-2941.59Show/hide
Query:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEE----QLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGK
        +L+AR NL E+ Q Q+AR+I G +  IK+++ L +  VL+EA+SLAET+EE    +L  +  +  +  N  +KQS+   K D      EQ STS V+KGK
Subjt:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEE----QLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGK

Query:  NPVAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDIN--DDNEGEEEIEYAKGDEGEQLNCVVQRI
                 D + T  +  +    K+ N Y +P+  K +RCG+ GH+SN C  RK IA+ E+   ED  ++  D  E EEE E  + D+G++++C+VQR+
Subjt:  NPVAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDIN--DDNEGEEEIEYAKGDEGEQLNCVVQRI

Query:  LLTPKIETHPQRHSLFRTKCTIMGKI
        L+TPK ET+PQ HSLF+T+CTI GK+
Subjt:  LLTPKIETHPQRHSLFRTKCTIMGKI

A0A5B7BER3 Uncharacterized protein5.0e-2938.33Show/hide
Query:  LNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVAY
        L++RNNL E+  QQVARY+ G +  I+DQLNL+    L EA SLA  +E Q    P + Q         S N   +D               +G  P   
Subjt:  LNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVAY

Query:  KPIGDDRLTENQPNNQDL---RKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEY-----AKGDEGEQLNCVVQR
        K    D+ + ++  N  +   +KS NPYA+P P K +RC + GH SN+CP R+Q+ ++    +   D  ++ E E + EY      +GDEGE ++CVVQR
Subjt:  KPIGDDRLTENQPNNQDL---RKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEY-----AKGDEGEQLNCVVQR

Query:  ILLTPKIETHPQRHSLFRTKCTIMGKI
        +LL PK E  PQRH++FRT+CTI  K+
Subjt:  ILLTPKIETHPQRHSLFRTKCTIMGKI

A0A5D3C3X9 Reverse transcriptase3.3e-2532.08Show/hide
Query:  PRNRRFQENFDEFDEEGEINQIDPPYGNQR--QNHWNDRQYGEPNYKMKIDLPVFDGK-----------------------------------------L
        PRN+   +   ++    +  Q  P +   R  +  +++R+      KMKIDLP +DGK                                         L
Subjt:  PRNRRFQENFDEFDEEGEINQIDPPYGNQR--QNHWNDRQYGEPNYKMKIDLPVFDGK-----------------------------------------L

Query:  NARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVAYK
         AR NL E+ Q Q+AR+I G +  IK+++ LQ    L+EA+S AET+EE             N I  ++                STS   KGK  V  +
Subjt:  NARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVAYK

Query:  PIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPKIET
         + DD+  E         K  N Y +P+  K +RCG+ GH SN CP RK IA+ ++   ED       E EEE +  + D+G +++CV+QR+LL PK ET
Subjt:  PIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPKIET

Query:  HPQRHSLFRTKCTIMGKI
        +PQ HSLF+T+CTI GK+
Subjt:  HPQRHSLFRTKCTIMGKI

A0A5D3DGR0 Reverse transcriptase1.1e-2534.39Show/hide
Query:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEK-QSHNWNKKDSAYHEFEQGSTSNVNKGKNPV
        +L  R NL+E  +  ++ ++ G +  +K+++ LQ    L+EA++ AET+EE ++          NR +  +   W    S      + +T+  +K KN  
Subjt:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEK-QSHNWNKKDSAYHEFEQGSTSNVNKGKNPV

Query:  AYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPK
        + KP+  +  +  +   +  +K  NPY +P     YRCG+ GH SNQCP RK IA+ ++  N+D       E +EE E  + DEG+ L+C++QR+L++PK
Subjt:  AYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPK

Query:  IETHPQRHSLFRTKCTIMGKI
         E   QRHSLF+T+CTI GK+
Subjt:  IETHPQRHSLFRTKCTIMGKI

A0A5D3E417 Transposon Ty3-I Gag-Pol polyprotein isoform X17.7e-3041.78Show/hide
Query:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEE----QLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGK
        +L AR NL E+ Q Q+AR+I G +  IK+++ L +  VL+EA+SLAET+EE    +L  +  +  +  N  +KQS+   K D      EQ STS V+KGK
Subjt:  KLNARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEE----QLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGK

Query:  NPVAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDIN-DDNEGEEEIEYAKGDEGEQLNCVVQRIL
                 D + T  +  +    K+ N Y +P+  K +RCG+ GH+SN C  RK IA+ E+   ED  ++  D E EEE E  + D+G++++C+VQR+L
Subjt:  NPVAYKPIGDDRLTENQPNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDIN-DDNEGEEEIEYAKGDEGEQLNCVVQRIL

Query:  LTPKIETHPQRHSLFRTKCTIMGKI
        +TPK ET+PQ HSLF+T+CTI GK+
Subjt:  LTPKIETHPQRHSLFRTKCTIMGKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGGTCAAAGAGATAATCTCAATCCAGACACAGTTCGAAGTGGGAACGTGGAGAATGCCGCAATGCACGGTCCTCGAGCACAAATTGTGTTAACACCTGAAATCCT
TCAAGAATTATCAAACTTGAAGGGACAACAGGGTGCTATCCAAAATCCAAGAAACAGAAGATTTCAAGAAAATTTTGATGAATTTGACGAAGAAGGAGAAATTAATCAAA
TCGATCCACCATATGGGAACCAAAGACAGAATCATTGGAATGACCGACAATATGGAGAGCCAAATTACAAAATGAAGATTGATTTACCAGTTTTTGATGGGAAATTAAAT
GCTCGTAACAATTTAGTAGAAAGCAATCAACAACAAGTTGCAAGATATATTTCAGGCCCAAAGAAACAAATAAAAGATCAACTAAATTTACAAAACCCAAATGTCCTAGC
TGAAGCAGTTTCATTGGCTGAAACATTGGAAGAACAATTAGATACAACTCCCCCAAAACAACAATTTCTAAAAAATAGAATTGAGAAACAATCTCATAATTGGAACAAAA
AGGACAGTGCTTACCATGAGTTTGAACAAGGCTCCACTTCTAATGTTAATAAAGGAAAAAATCCAGTAGCTTATAAACCCATAGGTGACGATAGACTAACTGAAAATCAA
CCAAACAATCAAGATCTTAGAAAGTCAGTCAATCCATATGCTAAACCAACACCAAATAAATATTATAGATGTGGAAAACAAGGACATATTTCTAATCAGTGCCCAGCAAG
AAAACAAATTGCAATAATGGAAGAATGTGTGAATGAAGATGATGATATTAATGATGATAATGAAGGAGAGGAAGAAATTGAATATGCTAAGGGTGATGAAGGAGAACAAT
TAAATTGTGTTGTTCAACGAATTTTACTAACACCAAAAATAGAAACTCATCCTCAACGACATTCCTTGTTTAGAACTAAGTGTACTATCATGGGAAAAATCAATCTCTCT
CTAATGCTGAAGAATGAGTTGTTGTTGCCTTTGAATCTTATCAATGCTTTGCATGGAAGTACAGAGGGGAAGTACAGAGGGGAAAAGTCTCTGTTGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGGTCAAAGAGATAATCTCAATCCAGACACAGTTCGAAGTGGGAACGTGGAGAATGCCGCAATGCACGGTCCTCGAGCACAAATTGTGTTAACACCTGAAATCCT
TCAAGAATTATCAAACTTGAAGGGACAACAGGGTGCTATCCAAAATCCAAGAAACAGAAGATTTCAAGAAAATTTTGATGAATTTGACGAAGAAGGAGAAATTAATCAAA
TCGATCCACCATATGGGAACCAAAGACAGAATCATTGGAATGACCGACAATATGGAGAGCCAAATTACAAAATGAAGATTGATTTACCAGTTTTTGATGGGAAATTAAAT
GCTCGTAACAATTTAGTAGAAAGCAATCAACAACAAGTTGCAAGATATATTTCAGGCCCAAAGAAACAAATAAAAGATCAACTAAATTTACAAAACCCAAATGTCCTAGC
TGAAGCAGTTTCATTGGCTGAAACATTGGAAGAACAATTAGATACAACTCCCCCAAAACAACAATTTCTAAAAAATAGAATTGAGAAACAATCTCATAATTGGAACAAAA
AGGACAGTGCTTACCATGAGTTTGAACAAGGCTCCACTTCTAATGTTAATAAAGGAAAAAATCCAGTAGCTTATAAACCCATAGGTGACGATAGACTAACTGAAAATCAA
CCAAACAATCAAGATCTTAGAAAGTCAGTCAATCCATATGCTAAACCAACACCAAATAAATATTATAGATGTGGAAAACAAGGACATATTTCTAATCAGTGCCCAGCAAG
AAAACAAATTGCAATAATGGAAGAATGTGTGAATGAAGATGATGATATTAATGATGATAATGAAGGAGAGGAAGAAATTGAATATGCTAAGGGTGATGAAGGAGAACAAT
TAAATTGTGTTGTTCAACGAATTTTACTAACACCAAAAATAGAAACTCATCCTCAACGACATTCCTTGTTTAGAACTAAGTGTACTATCATGGGAAAAATCAATCTCTCT
CTAATGCTGAAGAATGAGTTGTTGTTGCCTTTGAATCTTATCAATGCTTTGCATGGAAGTACAGAGGGGAAGTACAGAGGGGAAAAGTCTCTGTTGAATTAA
Protein sequenceShow/hide protein sequence
MTGQRDNLNPDTVRSGNVENAAMHGPRAQIVLTPEILQELSNLKGQQGAIQNPRNRRFQENFDEFDEEGEINQIDPPYGNQRQNHWNDRQYGEPNYKMKIDLPVFDGKLN
ARNNLVESNQQQVARYISGPKKQIKDQLNLQNPNVLAEAVSLAETLEEQLDTTPPKQQFLKNRIEKQSHNWNKKDSAYHEFEQGSTSNVNKGKNPVAYKPIGDDRLTENQ
PNNQDLRKSVNPYAKPTPNKYYRCGKQGHISNQCPARKQIAIMEECVNEDDDINDDNEGEEEIEYAKGDEGEQLNCVVQRILLTPKIETHPQRHSLFRTKCTIMGKINLS
LMLKNELLLPLNLINALHGSTEGKYRGEKSLLN