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Lag0028546 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028546
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:24709424..24710726
RNA-Seq ExpressionLag0028546
SyntenyLag0028546
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]2.1e-0736.56Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKL----KNQAKPEKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGR
        + + +PL RG+ L     GKIL   +YE+L DFCY CG + H +  C K     +++ K  K++G W+RA   PR K    +  G    R GR
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKL----KNQAKPEKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGR

OMP03234.1 hypothetical protein COLO4_10561 [Corchorus olitorius]2.5e-0835.48Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKL----KNQAKPEKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGR
        + +N+PL RG+ L     GKIL   +YE+L DFCY CG ++H +  C K     ++  K +K++G W+RA   PR      +  G    R G+
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKL----KNQAKPEKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGR

XP_021749920.1 uncharacterized protein LOC110715641 [Chenopodium quinoa]6.1e-0740.85Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKLKNQ----AKPEKQFGSWMRAA
        +++++PL RG+ L GG        IKYERL DFC+YCG++DH D  C K + +     +   Q+G W+RA+
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKLKNQ----AKPEKQFGSWMRAA

XP_023888396.1 uncharacterized protein LOC112000488 [Quercus suber]1.2e-0740.28Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKLKNQ----AKPEKQFGSWMRAAT
        + I++PLCRG  +N G T  +    +YERL  FCY+CG ++H++  C    +     +K E+Q+G+W+RAAT
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKLKNQ----AKPEKQFGSWMRAAT

XP_030930480.1 uncharacterized protein LOC115956164 [Quercus lobata]4.7e-0738.83Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCP---KLKNQAKP-EKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGRGRFGYKQ
        + I +PLCRG  +  G  G      KYERL  FCY CGMIDH++  C    + K   +P EKQFG W+RA     +K        Y   R G        
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCP---KLKNQAKP-EKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGRGRFGYKQ

Query:  RRW
        RRW
Subjt:  RRW

TrEMBL top hitse value%identityAlignment
A0A1R3K847 Uncharacterized protein1.2e-0835.48Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKL----KNQAKPEKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGR
        + +N+PL RG+ L     GKIL   +YE+L DFCY CG ++H +  C K     ++  K +K++G W+RA   PR      +  G    R G+
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKL----KNQAKPEKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGR

A0A2N9F1H4 Uncharacterized protein9.2e-0941.03Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSC----PKLKNQAKPEKQFGSWMRAAT--PPRK
        + +N PLCRG  +N     K     +YERL +FCY+CG +DH +  C     + ++ AK E Q+G+W+RA++  PPRK
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSC----PKLKNQAKPEKQFGSWMRAAT--PPRK

A0A2N9FMM2 Uncharacterized protein9.2e-0941.03Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSC----PKLKNQAKPEKQFGSWMRAAT--PPRK
        + +N PLCRG  +N     K     +YERL +FCY+CG +DH +  C     + ++ AK E Q+G+W+RA++  PPRK
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSC----PKLKNQAKPEKQFGSWMRAAT--PPRK

A0A2N9G219 RNase H domain-containing protein7.0e-0941.03Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSC----PKLKNQAKPEKQFGSWMRAAT--PPRK
        + +N PLCRG  +N     K     +YERL +FCY+CG +DH +  C     + ++ AK E Q+G+W+RA++  PPRK
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSC----PKLKNQAKPEKQFGSWMRAAT--PPRK

A0A2N9GU75 RNase H domain-containing protein9.2e-0941.03Show/hide
Query:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSC----PKLKNQAKPEKQFGSWMRAAT--PPRK
        +++N PLCRG  +N     K     +YERL +FCY+CG +DH +  C     +  + AK E Q+G+W+RA++  PPRK
Subjt:  MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSC----PKLKNQAKPEKQFGSWMRAAT--PPRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATCAATGAACCATTATGCAGAGGCCTAACTCTAAATGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACTAGATTTTTGTTACTACTG
TGGGATGATTGATCACAACGACGGATCATGCCCCAAACTGAAGAATCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAACTCCCCCGAGAAAGAAAC
ATTTTCACACAAATAACAAAGGATACGAGGGAATTAGAGGAGGAAGAGGACGATTCGGGTACAAACAAAGAAGATGGCAACCATGGCAATCCAATGCATGGGAGGAAGAA
GAAGAAAACATACATGGAGAGTCAGAGGACTCCCAAAGCTCCGATGAAAGCGGTGACGAACGGCAGCTGGAAAACAACCGTCGGTCGTCTACTACACCCTTTTCCGATGA
ATTCTCCCCGCAATCAATGCAATCGACAGAGATAATGGGTATTAAATGTCCCATTTCCTTTGATAACGCTTCTCTTGTGGAGAATTTCCCTTTTAATGCAGGCAGCGTGA
TTCACGGCAACGAGAATGGAGAAAATAATGGCTGCTCCGTTTTAGAAAGTTTGAAATCTTGCGAATCAAATATGGGAAAAGGGAAGAGAAGAAACGACTGCTGTGAGGAT
CTAGGGCAAGGAAACTCAGTGGGGGAAAAAGAGTTGAATGGACGAAGATTTTTTGAAATCCAATCAACAACCGACAAAGAAAATCATGGGGAATTTACTAACGGAGATGA
GAAACATGGAGCAATTGAAAATCCAACAAACAGTGAAAAAAGACAATCCAGAGGATGGAAGAGGGTTAATAGGTCGTGGGATAAAATCAAGACCAATTTCCCCATGCAAC
AAACAGTTCAGTTCACTCGTAAGAAGAGGGTCGTTGATGATGACGGCCTAGAAAGGTGCCCAAGCAAGAGACTCAAATCACCACTTCCTCCAAACGATGGAAGTCTATTG
GCGGAGCCTGTTGAGCAGGCCCGTCGGGAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATCAATGAACCATTATGCAGAGGCCTAACTCTAAATGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACTAGATTTTTGTTACTACTG
TGGGATGATTGATCACAACGACGGATCATGCCCCAAACTGAAGAATCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAACTCCCCCGAGAAAGAAAC
ATTTTCACACAAATAACAAAGGATACGAGGGAATTAGAGGAGGAAGAGGACGATTCGGGTACAAACAAAGAAGATGGCAACCATGGCAATCCAATGCATGGGAGGAAGAA
GAAGAAAACATACATGGAGAGTCAGAGGACTCCCAAAGCTCCGATGAAAGCGGTGACGAACGGCAGCTGGAAAACAACCGTCGGTCGTCTACTACACCCTTTTCCGATGA
ATTCTCCCCGCAATCAATGCAATCGACAGAGATAATGGGTATTAAATGTCCCATTTCCTTTGATAACGCTTCTCTTGTGGAGAATTTCCCTTTTAATGCAGGCAGCGTGA
TTCACGGCAACGAGAATGGAGAAAATAATGGCTGCTCCGTTTTAGAAAGTTTGAAATCTTGCGAATCAAATATGGGAAAAGGGAAGAGAAGAAACGACTGCTGTGAGGAT
CTAGGGCAAGGAAACTCAGTGGGGGAAAAAGAGTTGAATGGACGAAGATTTTTTGAAATCCAATCAACAACCGACAAAGAAAATCATGGGGAATTTACTAACGGAGATGA
GAAACATGGAGCAATTGAAAATCCAACAAACAGTGAAAAAAGACAATCCAGAGGATGGAAGAGGGTTAATAGGTCGTGGGATAAAATCAAGACCAATTTCCCCATGCAAC
AAACAGTTCAGTTCACTCGTAAGAAGAGGGTCGTTGATGATGACGGCCTAGAAAGGTGCCCAAGCAAGAGACTCAAATCACCACTTCCTCCAAACGATGGAAGTCTATTG
GCGGAGCCTGTTGAGCAGGCCCGTCGGGAGCCATGA
Protein sequenceShow/hide protein sequence
MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKLKNQAKPEKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGRGRFGYKQRRWQPWQSNAWEEE
EENIHGESEDSQSSDESGDERQLENNRRSSTTPFSDEFSPQSMQSTEIMGIKCPISFDNASLVENFPFNAGSVIHGNENGENNGCSVLESLKSCESNMGKGKRRNDCCED
LGQGNSVGEKELNGRRFFEIQSTTDKENHGEFTNGDEKHGAIENPTNSEKRQSRGWKRVNRSWDKIKTNFPMQQTVQFTRKKRVVDDDGLERCPSKRLKSPLPPNDGSLL
AEPVEQARREP