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Lag0028555 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028555
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr8:24808969..24809508
RNA-Seq ExpressionLag0028555
SyntenyLag0028555
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-2463.33Show/hide
Query:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
        ERAFG LK RWAI  G+SYYPVD+Q K ITACC LHNLI +EM S+ +FE  HLG  DS+ M  + I FVETT  W+ W D+LANQMF D
Subjt:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
KAA0049607.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-2252.21Show/hide
Query:  GGKDRHQTPKFFTMQ---FHDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWS
        GG     + + F M+   F +  ERAFG LK  WAI  G+SYY VD+Q K IT CC LHNLI +EMGS+ +FE  HL   DS+ M  + I FVETT  W+
Subjt:  GGKDRHQTPKFFTMQ---FHDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWS

Query:  TWWDDLANQMFFD
         W D+LANQMF D
Subjt:  TWWDDLANQMFFD
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]6.9e-2260Show/hide
Query:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
        ERAFG L  RW I  G+SYY VD+Q K ITACC LHNLI +EMGS+ +F+  HLG  DS+ M  + I FVETT  W+ W D+LANQMF D
Subjt:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-2158.89Show/hide
Query:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
        ERAFG LK  WAI  G+SYYPVD+Q K IT CC LH LI +E+GS  +FE  HLG  DS+ M  + I F+ETT  W+ W D+LANQMF D
Subjt:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-2463.33Show/hide
Query:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
        ERAFG LK RWAI  G+SYYPVD+Q K ITACC LHNLI +EM S+ +FE  HLG  DS+ M  + I FVETT  W+ W D+LANQMF D
Subjt:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
TrEMBL top hitse value%identityAlignment
A0A5A7U3R2 Retrotransposon protein1.2e-2463.33Show/hide
Query:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
        ERAFG LK RWAI  G+SYYPVD+Q K ITACC LHNLI +EM S+ +FE  HLG  DS+ M  + I FVETT  W+ W D+LANQMF D
Subjt:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
A0A5A7U5I3 Retrotransposon protein1.5e-2252.21Show/hide
Query:  GGKDRHQTPKFFTMQ---FHDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWS
        GG     + + F M+   F +  ERAFG LK  WAI  G+SYY VD+Q K IT CC LHNLI +EMGS+ +FE  HL   DS+ M  + I FVETT  W+
Subjt:  GGKDRHQTPKFFTMQ---FHDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWS

Query:  TWWDDLANQMFFD
         W D+LANQMF D
Subjt:  TWWDDLANQMFFD
A0A5A7VG45 Retrotransposon protein3.3e-2260Show/hide
Query:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
        ERAFG L  RW I  G+SYY VD+Q K ITACC LHNLI +EMGS+ +F+  HLG  DS+ M  + I FVETT  W+ W D+LANQMF D
Subjt:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
A0A5D3C542 Retrotransposon protein9.7e-2258.89Show/hide
Query:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
        ERAFG LK  WAI  G+SYYPVD+Q K IT CC LH LI +E+GS  +FE  HLG  DS+ M  + I F+ETT  W+ W D+LANQMF D
Subjt:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
A0A5D3C7X6 Retrotransposon protein1.2e-2463.33Show/hide
Query:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
        ERAFG LK RWAI  G+SYYPVD+Q K ITACC LHNLI +EM S+ +FE  HLG  DS+ M  + I FVETT  W+ W D+LANQMF D
Subjt:  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.4e-0439.62Show/hide
Query:  HDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSF
        H    R FG LK+R+ I      YP+  QVK + A C LHN +  E   D  F
Subjt:  HDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGTTTATTTTCGTCTTCCTTGGGTGGGAAAGATCGACATCAAACTCCAAAGTTCTTCACGATGCAGTTTCACGATCGACCAGAGCGAGCATTCGGTATGTTGAA
GGATCGATGGGCAATCCAATGTGGCAAGTCGTACTATCCTGTCGATGTGCAGGTAAAAACGATAACTGCTTGTTGTTATCTCCACAACTTGATTATTCAAGAAATGGGGT
CAGATCCTAGTTTTGAGGCCGCTCATCTCGGCAACCCAGATTCAAATGGGATGGCCACAGACAGGATCACTTTCGTGGAGACCACAACCGCATGGAGTACATGGTGGGAT
GATTTGGCTAACCAAATGTTCTTTGATTTGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGTTTATTTTCGTCTTCCTTGGGTGGGAAAGATCGACATCAAACTCCAAAGTTCTTCACGATGCAGTTTCACGATCGACCAGAGCGAGCATTCGGTATGTTGAA
GGATCGATGGGCAATCCAATGTGGCAAGTCGTACTATCCTGTCGATGTGCAGGTAAAAACGATAACTGCTTGTTGTTATCTCCACAACTTGATTATTCAAGAAATGGGGT
CAGATCCTAGTTTTGAGGCCGCTCATCTCGGCAACCCAGATTCAAATGGGATGGCCACAGACAGGATCACTTTCGTGGAGACCACAACCGCATGGAGTACATGGTGGGAT
GATTTGGCTAACCAAATGTTCTTTGATTTGGAATAG
Protein sequenceShow/hide protein sequence
MASLFSSSLGGKDRHQTPKFFTMQFHDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWD
DLANQMFFDLE