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Lag0028567 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028567
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr8:25104922..25105788
RNA-Seq ExpressionLag0028567
SyntenyLag0028567
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052833.1 uncharacterized protein E6C27_scaffold773G00310 [Cucumis melo var. makuwa]2.5e-1150Show/hide
Query:  MNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISH
        MNY++QG HPP  L  +V  QN  Y NT           S+ WL DSGCNA +TA+  NL IA+ Y+G+D +SV SG SLPI+H
Subjt:  MNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISH

KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]2.0e-1352.33Show/hide
Query:  RMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHN
        RMNY+FQG HPP QLA MV SQN A+ +  +SS           LTDSGCN H+T+D++ +S+A EY G++QV VG+G + PISH+
Subjt:  RMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHN

XP_011658579.1 uncharacterized protein LOC105436058 [Cucumis sativus]2.0e-1352.33Show/hide
Query:  RMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHN
        RMNY+FQG HPP QLA MV SQN A+ +  +SS           LTDSGCN H+T+D++ +S+A EY G++QV VG+G + PISH+
Subjt:  RMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHN

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]4.5e-1348.33Show/hide
Query:  SSGNF-------NRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNL---SIAS
        SSGNF       NR+     G+          RMN+HFQG HPP QLA MV  QN +Y          G  S +TWL DS CN H+TADLSNL   SIAS
Subjt:  SSGNF-------NRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNL---SIAS

Query:  EYAGDDQVSVGSGHSLPISH
        +Y G++ +SVGSG S PI+H
Subjt:  EYAGDDQVSVGSGHSLPISH

XP_022156563.1 uncharacterized protein LOC111023438 [Momordica charantia]2.4e-1437.78Show/hide
Query:  ASQTTPNLSQHSNSSGNFN----RARSSGRGR-----------------NQGRGRGFNP---------------------------------RMNYHFQG
        A   T   S H+    NFN    R R+SG+                   N GRGRG  P                                 RMNY FQG
Subjt:  ASQTTPNLSQHSNSSGNFN----RARSSGRGR-----------------NQGRGRGFNP---------------------------------RMNYHFQG

Query:  CHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHNDS
         HPP QL  MV + N A            A S+ +WLTDSGCNAH+TADL  LS ASEY+GD+Q+ VG+G SLPI+H  S
Subjt:  CHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHNDS

TrEMBL top hitse value%identityAlignment
A0A2N9HEG5 Retrotran_gag_3 domain-containing protein4.1e-1240.8Show/hide
Query:  MFASQTTPNLSQHSNSSGNFNRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSN
        +FAS T  N + +S SS   N ++S G+GRN  + +G   RM++ +QG HPP +LA M             +S +NGA +  +WLTD+G   HLTA+++N
Subjt:  MFASQTTPNLSQHSNSSGNFNRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSN

Query:  LSIASEYAGDDQVSVGSGHSLPISH
        L+  + Y G DQV+VG+G S+PI++
Subjt:  LSIASEYAGDDQVSVGSGHSLPISH

A0A2N9IBB1 Integrase catalytic domain-containing protein1.6e-1638.29Show/hide
Query:  MFASQTTPNLSQHSNSSGNFNRARSSGRGRNQ------GRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHL
        MF S   PN     N +  FNR    GRGRN       G GR     MN+ +QG +P T+LA M  + N+ Y   T            TWLTD+G   H+
Subjt:  MFASQTTPNLSQHSNSSGNFNRARSSGRGRNQ------GRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHL

Query:  TADLSNLSIASEYAGDDQVSVGSGHSLPI-----------SHNDSDSSYSLWHNRLGHPGPSVVNYVFRFFGLSS
        TA+ +NLS  + Y G +QVSVG+G +LPI           +H+ S   + LWH+RLGHP   V+  VF  F  +S
Subjt:  TADLSNLSIASEYAGDDQVSVGSGHSLPI-----------SHNDSDSSYSLWHNRLGHPGPSVVNYVFRFFGLSS

A0A5A7UA88 Uncharacterized protein1.2e-1150Show/hide
Query:  MNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISH
        MNY++QG HPP  L  +V  QN  Y NT           S+ WL DSGCNA +TA+  NL IA+ Y+G+D +SV SG SLPI+H
Subjt:  MNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISH

A0A6J1D9L6 uncharacterized protein LOC1110188922.2e-1348.33Show/hide
Query:  SSGNF-------NRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNL---SIAS
        SSGNF       NR+     G+          RMN+HFQG HPP QLA MV  QN +Y          G  S +TWL DS CN H+TADLSNL   SIAS
Subjt:  SSGNF-------NRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNL---SIAS

Query:  EYAGDDQVSVGSGHSLPISH
        +Y G++ +SVGSG S PI+H
Subjt:  EYAGDDQVSVGSGHSLPISH

A0A6J1DQZ0 uncharacterized protein LOC1110234381.2e-1437.78Show/hide
Query:  ASQTTPNLSQHSNSSGNFN----RARSSGRGR-----------------NQGRGRGFNP---------------------------------RMNYHFQG
        A   T   S H+    NFN    R R+SG+                   N GRGRG  P                                 RMNY FQG
Subjt:  ASQTTPNLSQHSNSSGNFN----RARSSGRGR-----------------NQGRGRGFNP---------------------------------RMNYHFQG

Query:  CHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHNDS
         HPP QL  MV + N A            A S+ +WLTDSGCNAH+TADL  LS ASEY+GD+Q+ VG+G SLPI+H  S
Subjt:  CHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHNDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGCGTCTCAAACAACGCCCAATCTCTCTCAGCATTCCAACTCCTCTGGAAATTTTAATCGAGCAAGGTCATCTGGCCGTGGACGCAATCAAGGTCGTGGTCGTGG
ATTCAATCCAAGAATGAACTACCATTTCCAAGGGTGTCATCCACCTACGCAACTAGCAACCATGGTGGTCTCTCAAAATGTTGCTTACTGCAACACAACATCAAGCAGTG
TGAATAATGGAGCTGGTTCCTCTTCTACTTGGTTAACCGATTCTGGTTGTAATGCTCATCTTACCGCTGATCTCAGTAATTTGTCTATTGCTTCAGAATATGCAGGTGAT
GATCAAGTATCAGTAGGCAGTGGCCATTCCCTCCCAATTTCTCACAATGACTCAGATAGCTCTTATTCTCTTTGGCATAATCGATTAGGACACCCTGGTCCTTCTGTTGT
TAATTATGTTTTTCGTTTCTTCGGTTTATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGCGTCTCAAACAACGCCCAATCTCTCTCAGCATTCCAACTCCTCTGGAAATTTTAATCGAGCAAGGTCATCTGGCCGTGGACGCAATCAAGGTCGTGGTCGTGG
ATTCAATCCAAGAATGAACTACCATTTCCAAGGGTGTCATCCACCTACGCAACTAGCAACCATGGTGGTCTCTCAAAATGTTGCTTACTGCAACACAACATCAAGCAGTG
TGAATAATGGAGCTGGTTCCTCTTCTACTTGGTTAACCGATTCTGGTTGTAATGCTCATCTTACCGCTGATCTCAGTAATTTGTCTATTGCTTCAGAATATGCAGGTGAT
GATCAAGTATCAGTAGGCAGTGGCCATTCCCTCCCAATTTCTCACAATGACTCAGATAGCTCTTATTCTCTTTGGCATAATCGATTAGGACACCCTGGTCCTTCTGTTGT
TAATTATGTTTTTCGTTTCTTCGGTTTATCTTCATGA
Protein sequenceShow/hide protein sequence
MFASQTTPNLSQHSNSSGNFNRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGD
DQVSVGSGHSLPISHNDSDSSYSLWHNRLGHPGPSVVNYVFRFFGLSS