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Lag0028580 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028580
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr8:25713889..25714835
RNA-Seq ExpressionLag0028580
SyntenyLag0028580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6734747.1 hypothetical protein I3842_01G285500 [Carya illinoinensis]4.1e-1730.69Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDV--EEVQYVGNKLF-------------------
        MA+ +YQWPTER    K AGI+EL+  ++L A +A+L++ ++ LT+  + +S   +A         +   E+VQYV N+ +                   
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDV--EEVQYVGNKLF-------------------

Query:  ------TQGVQTSTTP------------------VCTIMRT--------SRTRTRRIFCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQC
              T+ V     P                  V  +  T        SR       CS+          QIGQ+A+ +NA Q+G FPS+TE NP+EQC
Subjt:  ------TQGVQTSTTP------------------VCTIMRT--------SRTRTRRIFCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQC

Query:  KMVTLRSGK------------TEDEQKNGRHDEKLNEEEVV--PCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLDEQIQKFL
        K +TLRSGK            T     NG+  +++ EEE+V       D    IS P    + P      LP+PQRF+  KLD+Q  KFL
Subjt:  KMVTLRSGK------------TEDEQKNGRHDEKLNEEEVV--PCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLDEQIQKFL

KAG7947748.1 hypothetical protein I3843_14G109500 [Carya illinoinensis]4.1e-1730.69Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDV--EEVQYVGNKLF-------------------
        MA+ +YQWPTER    K AGI+EL+  ++L A +A+L++ ++ LT+  + +S   +A         +   E+VQYV N+ +                   
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDV--EEVQYVGNKLF-------------------

Query:  ------TQGVQTSTTP------------------VCTIMRT--------SRTRTRRIFCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQC
              T+ V     P                  V  +  T        SR       CS+          QIGQ+A+ +NA Q+G FPS+TE NP+EQC
Subjt:  ------TQGVQTSTTP------------------VCTIMRT--------SRTRTRRIFCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQC

Query:  KMVTLRSGK------------TEDEQKNGRHDEKLNEEEVV--PCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLDEQIQKFL
        K +TLRSGK            T     NG+  +++ EEE+V       D    IS P    + P      LP+PQRF+  KLD+Q  KFL
Subjt:  KMVTLRSGK------------TEDEQKNGRHDEKLNEEEVV--PCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLDEQIQKFL

XP_022851217.1 uncharacterized protein LOC111373002 [Olea europaea var. sylvestris]9.1e-1731.73Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLT---SSEVVKSISTLAEGYSKKEGQDVEEVQYVGNKLFTQGVQTS-----------
        +   S+QWP+ER +  K AG+YE+D  ++L A M+SLTN +  LT   S +  KSI   +  Y K E ++ E++QYV ++ F Q    S           
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLT---SSEVVKSISTLAEGYSKKEGQDVEEVQYVGNKLFTQGVQTS-----------

Query:  ----TTPVCTIMRTSRTRTRRIFCSHR----------------------QIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEK
               +  I+ T  + TR  F                          QIGQIA+ + + QKG+FPSDTE NPRE C  +TLRSGK  +E+K       
Subjt:  ----TTPVCTIMRTSRTRTRRIFCSHR----------------------QIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEK

Query:  LNEEEVVPCNHH--DKGSHISLPKRRGECPTFDYR---------------ELPFPQRFKNVKLDEQIQKFL
           E  VP + H   +       K + E     Y+                LPFPQR+   + DE+  KFL
Subjt:  LNEEEVVPCNHH--DKGSHISLPKRRGECPTFDYR---------------ELPFPQRFKNVKLDEQIQKFL

XP_023874613.1 uncharacterized protein LOC111987139 [Quercus suber]1.5e-1629.17Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDV--EEVQYVGNKLFT------------------
        MA+ +YQWPTER    K AGI+EL+  ++L A +ASL++ ++ LT+  + +    +A         +   E+VQY+ N+ +                   
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDV--EEVQYVGNKLFT------------------

Query:  -----------------------QGVQTSTTPVCTIMRTSRTRTR--------RIFCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQCKM
                               + +      V  +  T  T  +           CS+          QIGQ+A+ +NA Q+G FPS+TE NP+EQCK 
Subjt:  -----------------------QGVQTSTTPVCTIMRTSRTRTR--------RIFCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQCKM

Query:  VTLRSGK------------TEDEQKNGRHDEKLNEEEVV--PCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLDEQIQKFL
        +TLRSG+            T     NG+   K+ EEE+V       D    IS P    + P      LP+PQRF+  KLD+Q  KFL
Subjt:  VTLRSGK------------TEDEQKNGRHDEKLNEEEVV--PCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLDEQIQKFL

XP_024029937.1 uncharacterized protein LOC112094091 [Morus notabilis]2.0e-1633.74Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDVEEVQYVGNKL-----FTQGVQTSTTPVCTIMR
        M+  SYQWP+ER    K AGI+E D  +SL A +++L+N +  LT+ E   S   +A   +     +    Q   N L     F Q V      V  ++ 
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDVEEVQYVGNKL-----FTQGVQTSTTPVCTIMR

Query:  TSRTRTRRIF-------------CSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEKLNEEEVVPCNHHD
        T    TR  F             C++          +IGQ+A+ V     GKFPSDTEPN ++ CK +TLRSGK  +  K    ++K  EEEV      +
Subjt:  TSRTRTRRIF-------------CSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEKLNEEEVVPCNHHD

Query:  KGSHISLPKRRG--ECPTFDYRELPFPQRFKNVKLDEQIQKFL
        +    + PK     + P      LP+PQRFK  KLD Q  KFL
Subjt:  KGSHISLPKRRG--ECPTFDYRELPFPQRFKNVKLDEQIQKFL

TrEMBL top hitse value%identityAlignment
A0A1U7Z6K8 uncharacterized protein LOC1045909352.9e-1334.08Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKL-TSSEVVKSI---STLAEGYSKKEGQDVEEVQYVGNKLFTQGVQTSTTPVCTIMRT
        MAA SYQW  E+ +  K  GIY  D  ++L A +A+L   L  L  S+  V SI   S    G  +    D +       +   Q  Q     +  +M  
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKL-TSSEVVKSI---STLAEGYSKKEGQDVEEVQYVGNKLFTQGVQTSTTPVCTIMRT

Query:  SRTRTR-RIFCSHRQIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEKLNEEEVVPCNHHDKGSHISLPKRRGECPTFDYRE-
            T  RI     QIGQ+A  ++A  +G  P + E NPREQ K +TLRSGK  + +K  + DE++ EEE+      + G + S  +++G   T + +  
Subjt:  SRTRTR-RIFCSHRQIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEKLNEEEVVPCNHHDKGSHISLPKRRGECPTFDYRE-

Query:  ---LPFPQRFKNVKLDEQIQKFL
           LPFP+RF   KLD+Q  KFL
Subjt:  ---LPFPQRFKNVKLDEQIQKFL

A0A2P5BPI6 Uncharacterized protein7.5e-0941.12Show/hide
Query:  QIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEKLNEEEVV--PCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLD
        QIGQ+A+ +   Q GKFPSDTE NP++ CK +TLR+GK  +  +   +   + +E VV  P     K S IS      + P      LP+PQRF+  KLD
Subjt:  QIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEKLNEEEVV--PCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLD

Query:  EQIQKFL
         Q  K L
Subjt:  EQIQKFL

A0A6J1DU19 uncharacterized protein LOC1110243616.3e-1637.55Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLT------SSEVVKSISTLAEGYSKKEGQDVEEVQYVGN----KLFTQGVQTSTTPV
        MA  S+QWP+ER    K AG+YE+DE SSLKA + +LTNA++KL+      S+E+V +  T    YS  E   +E+ Q+  +    K   + +  +    
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLT------SSEVVKSISTLAEGYSKKEGQDVEEVQYVGN----KLFTQGVQTSTTPV

Query:  CTIMRTSRT-------------RTRRIFCSHRQIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGK--TEDEQKNGRH-----DEKLNEEEVV---
        C   R SR               T  I     QIGQIA  +N +QKGKFPSD E  PRE CK VTLRSGK   E E+K         +E+ N+EEVV   
Subjt:  CTIMRTSRT-------------RTRRIFCSHRQIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGK--TEDEQKNGRH-----DEKLNEEEVV---

Query:  -PCNHHDK--GSHISLPKRRGECPTFDYRELPFPQRF
         P    DK   S +S P      P     ++P   RF
Subjt:  -PCNHHDK--GSHISLPKRRGECPTFDYRELPFPQRF

A0A6P9DWY0 uncharacterized protein LOC1183440268.0e-1130.95Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDV--EEVQYVGNKLF-------------------
        MA+ +YQWP ER    K AGI+EL+  ++L A +ASL++ ++ LT+  + +S   +A         +   E+VQY+ N+ +                   
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDV--EEVQYVGNKLF-------------------

Query:  ------TQGV---------QTSTTPVC-----------TIMRTSRTRTR----RIFCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQCKM
              T+ V         Q S   +            T  R  +T +R       CS+          QIGQ+A+ +NA Q+G FPS+TE NPREQCK 
Subjt:  ------TQGV---------QTSTTPVC-----------TIMRTSRTRTR----RIFCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQCKM

Query:  VTLRSGKTED
        +TLRSG+  D
Subjt:  VTLRSGKTED

A0A6P9E7J9 uncharacterized protein LOC1183442384.0e-1031.46Show/hide
Query:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKS----ISTLAEGYSKKEGQDVEEVQYVGNKLFT-QGVQTSTT-------
        MA+ + QWPTER    K  GI+EL+  ++L A  A+L++ ++ LT+  + +S    ++T     S +  Q  E+VQY+ N  +  +G  + ++       
Subjt:  MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKS----ISTLAEGYSKKEGQDVEEVQYVGNKLFT-QGVQTSTT-------

Query:  -PVCTIMRTSRTRTRRI---------FCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGK
          + + ++ + TR ++I          CS+          QIGQ+A+ +NA Q+G  P +T+ NP EQCK +TLRSG+
Subjt:  -PVCTIMRTSRTRTRRI---------FCSHR---------QIGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCAACCAGTTATCAGTGGCCGACCGAGAGGGGAGCAGTTTCTAAGAAGGCTGGAATTTATGAATTAGATGAGTCGAGTTCGTTGAAGGCACATATGGCATCTTT
GACAAATGCCCTGAACAAGCTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCTTAGCTGAAGGATATTCAAAAAAGGAAGGTCAAGATGTGGAAGAAGTTCAGTACG
TGGGAAACAAACTATTTACTCAAGGAGTACAAACTTCTACCACCCCAGTATGCACAATCATGAGAACTTCTCGTACTCGAACACGAAGAATATTTTGCAGCCACCGCCAG
ATAGGTCAGATAGCTTCACCGGTGAATGCCCTTCAAAAGGGAAAATTTCCAAGCGACACTGAACCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTAAGAAGTGGAAA
GACAGAAGATGAACAGAAGAATGGTAGGCATGACGAGAAACTAAACGAGGAAGAAGTGGTTCCATGCAACCATCATGACAAAGGCTCGCACATTAGCCTGCCCAAGCGAA
GGGGCGAATGTCCAACCTTCGATTACAGGGAGTTACCTTTTCCTCAACGCTTTAAAAATGTTAAATTAGATGAGCAAATTCAAAAATTCCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCAACCAGTTATCAGTGGCCGACCGAGAGGGGAGCAGTTTCTAAGAAGGCTGGAATTTATGAATTAGATGAGTCGAGTTCGTTGAAGGCACATATGGCATCTTT
GACAAATGCCCTGAACAAGCTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCTTAGCTGAAGGATATTCAAAAAAGGAAGGTCAAGATGTGGAAGAAGTTCAGTACG
TGGGAAACAAACTATTTACTCAAGGAGTACAAACTTCTACCACCCCAGTATGCACAATCATGAGAACTTCTCGTACTCGAACACGAAGAATATTTTGCAGCCACCGCCAG
ATAGGTCAGATAGCTTCACCGGTGAATGCCCTTCAAAAGGGAAAATTTCCAAGCGACACTGAACCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTAAGAAGTGGAAA
GACAGAAGATGAACAGAAGAATGGTAGGCATGACGAGAAACTAAACGAGGAAGAAGTGGTTCCATGCAACCATCATGACAAAGGCTCGCACATTAGCCTGCCCAAGCGAA
GGGGCGAATGTCCAACCTTCGATTACAGGGAGTTACCTTTTCCTCAACGCTTTAAAAATGTTAAATTAGATGAGCAAATTCAAAAATTCCTATAA
Protein sequenceShow/hide protein sequence
MAATSYQWPTERGAVSKKAGIYELDESSSLKAHMASLTNALNKLTSSEVVKSISTLAEGYSKKEGQDVEEVQYVGNKLFTQGVQTSTTPVCTIMRTSRTRTRRIFCSHRQ
IGQIASPVNALQKGKFPSDTEPNPREQCKMVTLRSGKTEDEQKNGRHDEKLNEEEVVPCNHHDKGSHISLPKRRGECPTFDYRELPFPQRFKNVKLDEQIQKFL