; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028588 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028588
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr8:25882376..25884029
RNA-Seq ExpressionLag0028588
SyntenyLag0028588
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69274.1 TatD related DNase [Prunus dulcis]2.7e-3132.97Show/hide
Query:  GIPATNFPRFYRLTDRPRSLVGETWIASQSA----WDLSLRRNLNDLEIEEWMKLSLILSSVRL-QNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND
        GI    FPR Y L+ R    +   W A+       WD   RRNL++ EI E + L  IL +VRL  +R D   W +E    FS KS    L+    +   
Subjt:  GIPATNFPRFYRLTDRPRSLVGETWIASQSA----WDLSLRRNLNDLEIEEWMKLSLILSSVRL-QNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND

Query:  LYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPF
         YR IW    P KI+ F+W  ++  I T D +QR+ P+  LSPSWC+ C  ++++  HLF+HC+++ + W  +LDA G     P   K    L+ +    
Subjt:  LYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPF

Query:  HGEKKNQWL---ALNRVCFWFLWGERNSRIFR-DSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM
         G+ K   +    L    FW +W ERN RIF+  S    ++  D I F    W      F DY  S ++ +  A +
Subjt:  HGEKKNQWL---ALNRVCFWFLWGERNSRIFR-DSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM

CAN70431.1 hypothetical protein VITISV_030910 [Vitis vinifera]1.6e-3135.17Show/hide
Query:  AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKSLMEDL--VEYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRL
        AW+L+ RRNL D EI+   +L   LSSVR   +  DS  W L SS +F++KS    L  V  PI+     + +W+   P K+K   W ++H  + T D+L
Subjt:  AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKSLMEDL--VEYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRL

Query:  QRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSF
        Q + P   L P WCI+C A+ +   HLF+HC      W+++    G     P   +D+L + F G       K  W        W +W ERN RIF D  
Subjt:  QRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSF

Query:  SSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW
         S +   DLILF+   W  C   F    L+ L  NW
Subjt:  SSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW

RVW15777.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]3.5e-3134.75Show/hide
Query:  AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKSLMEDL--VEYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRL
        AW+L+ RRNL D EI+   +L   LSSVR   +  DS  W L SS +F++KS    L  V  PI+     + +W+   P K+K   W ++H  + T D+L
Subjt:  AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKSLMEDL--VEYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRL

Query:  QRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSF
        Q + P   L P WCI+C  + +   HLF+HC      W+++    G     P   +D+L + F G       K  W        W +W ERN RIF D  
Subjt:  QRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSF

Query:  SSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW
         S +   DLILF+   W  C   F    L+ L  NW
Subjt:  SSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW

RVW99869.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]8.4e-3327.93Show/hide
Query:  IGNSQLHVNHLRFADDTLLFSIFCKDALVNLFDVVKISELASGLNIYYSKSEVLGIHLEDSEL----ECCGIPATNFPRFY---RLTDRP----------
        +G ++  V+HL+FADDT+ FS   ++ L  L  ++      SGL +   KS + GI+L+ + +    E     A+ +P  Y    L   P          
Subjt:  IGNSQLHVNHLRFADDTLLFSIFCKDALVNLFDVVKISELASGLNIYYSKSEVLGIHLEDSEL----ECCGIPATNFPRFY---RLTDRP----------

Query:  -RSLVGETWIASQ------------------------SAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKSLMEDLVEYPI
         R +VG+  + SQ                         +W+L+ RRNL+D EIE+   L   L  V L  +  D+ LWPL SS +FS+KS    L ++  
Subjt:  -RSLVGETWIASQ------------------------SAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKSLMEDLVEYPI

Query:  MANDLY--RVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLI
         +  ++  + +W    P K++ F+W ++H  + T D LQ + P   LSP  CI+C    + + H+F+HC+     W  +          P  I D++ + 
Subjt:  MANDLY--RVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLI

Query:  FVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKA
        F G          W A N      +W ERN+RIF D   + +   D I+F    W  C   F    L+ ++ +W A
Subjt:  FVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKA

RVX02903.1 Actin-related protein 7 [Vitis vinifera]3.2e-3235.17Show/hide
Query:  AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKS--LMEDLVEYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRL
        AW+L+ RRNL D EI+   +L   LSSVR   +  DS  W L SS++FS+KS  L    V  PI+     + +W+   P K+K   W ++H  + T D+L
Subjt:  AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKS--LMEDLVEYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRL

Query:  QRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSF
        Q + P   L P WCI+C  + +   HLF+HC      W+++    G     P   +D+L + F G       K  W        W +W ERN+RIF+D  
Subjt:  QRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSF

Query:  SSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW
         S +   DLILF+   W  C   F    L+ L  NW
Subjt:  SSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW

TrEMBL top hitse value%identityAlignment
A0A438H7H3 Putative ribonuclease H protein1.8e-2829.76Show/hide
Query:  CG--IPATNFPRFYRLTDRPRSLVGETWIAS--QSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND
        CG  + A  FP+ + L  +  + V E W +S  Q  W++ L RNLND E++ + +L  +L  +R     D+ +W  ES ++F I+   + L    +++  
Subjt:  CG--IPATNFPRFYRLTDRPRSLVGETWIAS--QSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND

Query:  LYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPF
          + IW D  P K+  F WE S + + T+D+LQR+  QF   P+ C +C    ++  H+ +HC      W  +L  FG +  FP  +KD+  L+    PF
Subjt:  LYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPF

Query:  HGEKKNQ-WLALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCK
         G K+ + W ++    FW +W ERN   FR    +  K  +  + ++  W +
Subjt:  HGEKKNQ-WLALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCK

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.9e-3030.68Show/hide
Query:  PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIM-AN---DLYRVIWTD
        PR + L+   +  V E W  S + W L + R L D E   W  +   L +      +   LW L S+NIF   S+   + E PI  AN   +LY+ +W  
Subjt:  PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIM-AN---DLYRVIWTD

Query:  FYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQW
         +PKK K F+W L H  I T DRLQ+++P + LSP+WC MC  S +   HLF+HC ++ + WS+      W+ + P  ++ ++  I        +K    
Subjt:  FYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQW

Query:  LALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM
           N    W +W ERN+RIF+    +     +  L  +  W      F +Y    +  N  AF+
Subjt:  LALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein2.5e-3030.08Show/hide
Query:  PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND----LYRVIWTD
        PR + L+   +  V + W  S   W++ + R L D E   W  +   L +          LW L S+NIF   S+ +DL E      +    LY+ +W  
Subjt:  PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND----LYRVIWTD

Query:  FYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQW
         +PKK K F+W L H  I T DRLQ+++P + LSP+WC MC  S +   HLF+HC ++ + WS+      W+ + PN +K +   I      + + +   
Subjt:  FYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQW

Query:  LALNRVC--FWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM
        +  N +    W +W ERN+RIF+     F    + IL     W      F +Y    +  N  AF+
Subjt:  LALNRVC--FWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein2.5e-3030.08Show/hide
Query:  PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND----LYRVIWTD
        PR + L+   +  V + W  S   W++ + R L D E   W  +   L +          LW L S+NIF   S+ +DL E      +    LY+ +W  
Subjt:  PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND----LYRVIWTD

Query:  FYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQW
         +PKK K F+W L H  I T DRLQ+++P + LSP+WC MC  S +   HLF+HC ++ + WS+      W+ + PN +K +   I      + + +   
Subjt:  FYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQW

Query:  LALNRVC--FWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM
        +  N +    W +W ERN+RIF+     F    + IL     W      F +Y    +  N  AF+
Subjt:  LALNRVC--FWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM

A0A5H2XQW2 TatD related DNase1.3e-3132.97Show/hide
Query:  GIPATNFPRFYRLTDRPRSLVGETWIASQSA----WDLSLRRNLNDLEIEEWMKLSLILSSVRL-QNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND
        GI    FPR Y L+ R    +   W A+       WD   RRNL++ EI E + L  IL +VRL  +R D   W +E    FS KS    L+    +   
Subjt:  GIPATNFPRFYRLTDRPRSLVGETWIASQSA----WDLSLRRNLNDLEIEEWMKLSLILSSVRL-QNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMAND

Query:  LYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPF
         YR IW    P KI+ F+W  ++  I T D +QR+ P+  LSPSWC+ C  ++++  HLF+HC+++ + W  +LDA G     P   K    L+ +    
Subjt:  LYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPF

Query:  HGEKKNQWL---ALNRVCFWFLWGERNSRIFR-DSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM
         G+ K   +    L    FW +W ERN RIF+  S    ++  D I F    W      F DY  S ++ +  A +
Subjt:  HGEKKNQWL---ALNRVCFWFLWGERNSRIFR-DSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGAATTGTTTCTCATCCAATTGGAAATTCACAACTTCATGTGAATCATTTACGATTCGCTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCATTGGT
TAACTTGTTCGATGTTGTTAAAATTTCTGAATTGGCTTCTGGGTTGAATATTTACTATTCCAAGAGTGAGGTTTTGGGAATTCATTTAGAGGATTCGGAATTGGAATGTT
GTGGTATTCCGGCTACAAATTTTCCTCGTTTTTATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGGTGAGACATGGATTGCTTCTCAATCAGCATGGGACCTGAGTCTT
CGGCGTAATTTAAATGATTTGGAGATAGAAGAATGGATGAAATTATCTCTTATTCTTTCCTCCGTCAGATTACAGAACCGTAATGATTCCTGGTTATGGCCTTTAGAGTC
GTCCAATATTTTCTCTATTAAATCACTTATGGAGGACCTAGTTGAATATCCGATTATGGCAAATGATCTCTATAGGGTAATTTGGACCGATTTCTATCCAAAGAAGATCA
AGATTTTTCTATGGGAGCTTAGTCATGATGCTATTACTACAGTTGATAGACTTCAACGACAGATGCCTCAATTTCATTTGTCTCCATCATGGTGCATAATGTGTGCTGCT
AGTTCAAAACATTCTGGGCACCTATTTGTTCATTGTACCTTCGCTTCTAGATATTGGTCAGAGATTCTTGATGCTTTCGGATGGTCCATTGCTTTTCCAAATTGCATTAA
GGATGTTCTTACTCTCATTTTTGTGGGTCATCCCTTTCATGGAGAAAAGAAGAACCAGTGGCTTGCTTTGAACAGAGTCTGCTTTTGGTTTTTATGGGGCGAACGAAATT
CACGAATTTTCAGGGATTCTTTCTCTTCCTTTGATAAATTCATGGATCTAATTCTCTTTCATGTTTTATACTGGTGTAAATGTCAACACCCTTTCTTTGATTATAGTTTA
TCTTTTTTGATTTCCAATTGGAAAGCTTTCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGAATTGTTTCTCATCCAATTGGAAATTCACAACTTCATGTGAATCATTTACGATTCGCTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCATTGGT
TAACTTGTTCGATGTTGTTAAAATTTCTGAATTGGCTTCTGGGTTGAATATTTACTATTCCAAGAGTGAGGTTTTGGGAATTCATTTAGAGGATTCGGAATTGGAATGTT
GTGGTATTCCGGCTACAAATTTTCCTCGTTTTTATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGGTGAGACATGGATTGCTTCTCAATCAGCATGGGACCTGAGTCTT
CGGCGTAATTTAAATGATTTGGAGATAGAAGAATGGATGAAATTATCTCTTATTCTTTCCTCCGTCAGATTACAGAACCGTAATGATTCCTGGTTATGGCCTTTAGAGTC
GTCCAATATTTTCTCTATTAAATCACTTATGGAGGACCTAGTTGAATATCCGATTATGGCAAATGATCTCTATAGGGTAATTTGGACCGATTTCTATCCAAAGAAGATCA
AGATTTTTCTATGGGAGCTTAGTCATGATGCTATTACTACAGTTGATAGACTTCAACGACAGATGCCTCAATTTCATTTGTCTCCATCATGGTGCATAATGTGTGCTGCT
AGTTCAAAACATTCTGGGCACCTATTTGTTCATTGTACCTTCGCTTCTAGATATTGGTCAGAGATTCTTGATGCTTTCGGATGGTCCATTGCTTTTCCAAATTGCATTAA
GGATGTTCTTACTCTCATTTTTGTGGGTCATCCCTTTCATGGAGAAAAGAAGAACCAGTGGCTTGCTTTGAACAGAGTCTGCTTTTGGTTTTTATGGGGCGAACGAAATT
CACGAATTTTCAGGGATTCTTTCTCTTCCTTTGATAAATTCATGGATCTAATTCTCTTTCATGTTTTATACTGGTGTAAATGTCAACACCCTTTCTTTGATTATAGTTTA
TCTTTTTTGATTTCCAATTGGAAAGCTTTCATGTAA
Protein sequenceShow/hide protein sequence
MGRIVSHPIGNSQLHVNHLRFADDTLLFSIFCKDALVNLFDVVKISELASGLNIYYSKSEVLGIHLEDSELECCGIPATNFPRFYRLTDRPRSLVGETWIASQSAWDLSL
RRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAA
SSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSL
SFLISNWKAFM