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Lag0028589 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028589
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein CROWDED NUCLEI 3
Genome locationchr8:25884408..25884749
RNA-Seq ExpressionLag0028589
SyntenyLag0028589
Gene Ontology termsGO:0006997 - nucleus organization (biological process)
GO:0005652 - nuclear lamina (cellular component)
InterPro domainsIPR040418 - Protein crowded nuclei


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK00277.1 protein CROWDED NUCLEI 3 [Cucumis melo var. makuwa]4.0e-4079.82Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDWRKFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE

Query:  VSNYLRVLL
        V  ++  L+
Subjt:  VSNYLRVLL

XP_004147138.1 protein CROWDED NUCLEI 3 [Cucumis sativus]1.4e-4081.73Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A++NSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDWRKFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE

Query:  VSNY
        + +Y
Subjt:  VSNY

XP_008467201.1 PREDICTED: protein CROWDED NUCLEI 3 [Cucumis melo]1.4e-4082.69Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDWRKFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE

Query:  VSNY
        + +Y
Subjt:  VSNY

XP_022158848.1 protein CROWDED NUCLEI 1-like isoform X1 [Momordica charantia]5.3e-4082.57Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKAS
        MFTPQRKGWPAVSLTPRSEAK AVSNSI+VGKGK      VA TD PPP LGSL DGLH TAAAVDT DMDDWRKFKKAGLLDAA MERKDREALLEKAS
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKAS

Query:  RLQSEVSNY
        RLQ+E+ +Y
Subjt:  RLQSEVSNY

XP_022158849.1 protein CROWDED NUCLEI 1-like isoform X2 [Momordica charantia]5.3e-4082.57Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKAS
        MFTPQRKGWPAVSLTPRSEAK AVSNSI+VGKGK      VA TD PPP LGSL DGLH TAAAVDT DMDDWRKFKKAGLLDAA MERKDREALLEKAS
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKAS

Query:  RLQSEVSNY
        RLQ+E+ +Y
Subjt:  RLQSEVSNY

TrEMBL top hitse value%identityAlignment
A0A1S3CSZ3 protein CROWDED NUCLEI 36.7e-4182.69Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDWRKFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE

Query:  VSNY
        + +Y
Subjt:  VSNY

A0A5B7BDY8 Uncharacterized protein (Fragment)1.9e-2763.89Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVA----VSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASR
        MFTPQRK WPA+S+TPRSEA+ +     +N   VGKGKAVAF DGPPPPLGSLN+   KT A  D GDMDDWR+F++AGLLD   MERKD+EAL+EK S+
Subjt:  MFTPQRKGWPAVSLTPRSEAKVA----VSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASR

Query:  LQSEVSNY
        L  E+ +Y
Subjt:  LQSEVSNY

A0A5D3BM77 Protein CROWDED NUCLEI 31.9e-4079.82Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDWRKFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSE

Query:  VSNYLRVLL
        V  ++  L+
Subjt:  VSNYLRVLL

A0A6J1DX82 protein CROWDED NUCLEI 1-like isoform X12.5e-4082.57Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKAS
        MFTPQRKGWPAVSLTPRSEAK AVSNSI+VGKGK      VA TD PPP LGSL DGLH TAAAVDT DMDDWRKFKKAGLLDAA MERKDREALLEKAS
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKAS

Query:  RLQSEVSNY
        RLQ+E+ +Y
Subjt:  RLQSEVSNY

A0A6J1E0M3 protein CROWDED NUCLEI 1-like isoform X22.5e-4082.57Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKAS
        MFTPQRKGWPAVSLTPRSEAK AVSNSI+VGKGK      VA TD PPP LGSL DGLH TAAAVDT DMDDWRKFKKAGLLDAA MERKDREALLEKAS
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKAS

Query:  RLQSEVSNY
        RLQ+E+ +Y
Subjt:  RLQSEVSNY

SwissProt top hitse value%identityAlignment
I0J0E7 Nuclear matrix constituent protein 16.1e-0735.45Show/hide
Query:  MFTPQRKGWPAVSLT----PRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTG--DMDDWRKFKKAGLLDAAVMERKDREALLEKA
        M TPQR  W   S      PRS+ K         G  K +     P PPLG LN G       +D G  DM+ W++FK  GLLD ++  +KDRE+L  + 
Subjt:  MFTPQRKGWPAVSLT----PRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTG--DMDDWRKFKKAGLLDAAVMERKDREALLEKA

Query:  SRLQSEVSNY
          L+ ++  Y
Subjt:  SRLQSEVSNY

Q9CA42 Protein CROWDED NUCLEI 33.5e-1039.25Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRL
        MFTPQR  WP                     KGKA+AF+D    PPP    L +              DDW+KFK+ GLLD A +ERKDR+AL+EK  +L
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRL

Query:  QSEVSNY
        + E+ +Y
Subjt:  QSEVSNY

Q9SAF6 Protein CROWDED NUCLEI 29.7e-1348Show/hide
Query:  LTPRSEA-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY
        +TPRSE  K+  V+N      KGKAVAF+D       PPPP+G+L  G   +    D  DM DWR+F++ GLL+ A ME+KD+EALLEK S L+ E+  Y
Subjt:  LTPRSEA-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY

Arabidopsis top hitse value%identityAlignment
AT1G13220.1 nuclear matrix constituent protein-related4.2e-1949.56Show/hide
Query:  MFTPQRKGWPAVSLTPRSEA-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALL
        MFTPQRK W + ++TPRSE  K+  V+N      KGKAVAF+D       PPPP+G+L  G   +    D  DM DWR+F++ GLL+ A ME+KD+EALL
Subjt:  MFTPQRKGWPAVSLTPRSEA-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALL

Query:  EKASRLQSEVSNY
        EK S L+ E+  Y
Subjt:  EKASRLQSEVSNY

AT1G13220.2 nuclear matrix constituent protein-related6.9e-1448Show/hide
Query:  LTPRSEA-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY
        +TPRSE  K+  V+N      KGKAVAF+D       PPPP+G+L  G   +    D  DM DWR+F++ GLL+ A ME+KD+EALLEK S L+ E+  Y
Subjt:  LTPRSEA-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY

AT1G68790.1 little nuclei32.5e-1139.25Show/hide
Query:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRL
        MFTPQR  WP                     KGKA+AF+D    PPP    L +              DDW+KFK+ GLLD A +ERKDR+AL+EK  +L
Subjt:  MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRL

Query:  QSEVSNY
        + E+ +Y
Subjt:  QSEVSNY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCACGCCTCAGAGGAAGGGGTGGCCTGCTGTGTCCCTCACGCCTCGAAGCGAAGCAAAAGTTGCAGTTTCCAATTCCATTGTTGTGGGGAAAGGAAAGGCTGTGGC
TTTTACAGACGGCCCTCCGCCGCCGTTGGGCTCTCTGAACGACGGATTGCATAAAACTGCGGCGGCTGTGGATACTGGGGACATGGACGATTGGAGGAAGTTTAAGAAGG
CGGGGTTGTTGGATGCGGCCGTAATGGAGCGCAAAGATCGGGAGGCACTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGGTTAGCAATTATCTTCGAGTCTTACTCGTT
TTCTATCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCACGCCTCAGAGGAAGGGGTGGCCTGCTGTGTCCCTCACGCCTCGAAGCGAAGCAAAAGTTGCAGTTTCCAATTCCATTGTTGTGGGGAAAGGAAAGGCTGTGGC
TTTTACAGACGGCCCTCCGCCGCCGTTGGGCTCTCTGAACGACGGATTGCATAAAACTGCGGCGGCTGTGGATACTGGGGACATGGACGATTGGAGGAAGTTTAAGAAGG
CGGGGTTGTTGGATGCGGCCGTAATGGAGCGCAAAGATCGGGAGGCACTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGGTTAGCAATTATCTTCGAGTCTTACTCGTT
TTCTATCATTAG
Protein sequenceShow/hide protein sequence
MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNYLRVLLV
FYH