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Lag0028596 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028596
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:26042236..26042994
RNA-Seq ExpressionLag0028596
SyntenyLag0028596
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5472161.1 hypothetical protein F2P56_008900 [Juglans regia]7.7e-1741.54Show/hide
Query:  SLHKGSKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILK
        S+    ++ K  F ++K+DMSKAYDR+EW+F++ ++ RMGF S WI+ I  C+ +VS+SIL+NG     FK +    +DDSL+F KAQ +E+ ++  IL 
Subjt:  SLHKGSKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILK

Query:  VYEAV--QIVNFDKSEGWKGKLFSTTRKEV
         YE    Q +N +KS  +  K    TR+E+
Subjt:  VYEAV--QIVNFDKSEGWKGKLFSTTRKEV

OMO73216.1 reverse transcriptase [Corchorus capsularis]4.5e-1745.53Show/hide
Query:  KSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVY--EA
        KS K+    +K+DM+KAYDRVEW FL+ +M ++GF+S W+  I  CV ++S++++ING  S+ F  + GLRQDDSL FLKA  E    M  I++ Y   +
Subjt:  KSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVY--EA

Query:  VQIVNFDKSEGWKGKLFSTTRKE
         Q  NF KS    G  FST   E
Subjt:  VQIVNFDKSEGWKGKLFSTTRKE

XP_019198916.1 PREDICTED: uncharacterized protein LOC109192676 [Ipomoea nil]7.7e-1741.22Show/hide
Query:  FASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQD-------DSLLFLKAQKEEFDEMQQILKVYEAV
        ++++K+DM+KAYDR+EW FLR +M  +GF + W++ I +CV +VS++ L+NG  S+    T GLRQ        DSLLF KA  EE +E+++ + VYE +
Subjt:  FASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQD-------DSLLFLKAQKEEFDEMQQILKVYEAV

Query:  --QIVNFDKSEGWKGKLFSTTRKEVLIQAVA
          Q+VN+ KS     +  S   KE + Q +A
Subjt:  --QIVNFDKSEGWKGKLFSTTRKEVLIQAVA

XP_024190017.1 uncharacterized protein LOC112193983 [Rosa chinensis]2.0e-2045.45Show/hide
Query:  SKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYEAV
        ++S  +   S+K+DMSKAYD +EW FL  ++ R+GF   WI  I  CV+SV +S LING        T GLRQDDSLLF KA  EE   +Q +L  YE  
Subjt:  SKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYEAV

Query:  --QIVNFDKS--------------EGWKGKLFSTTRKEVLIQA
          Q VNF KS              EGW+GKL S+  K++LI+A
Subjt:  --QIVNFDKS--------------EGWKGKLFSTTRKEVLIQA

XP_040249922.1 uncharacterized protein LOC109742703 isoform X3 [Aegilops tauschii subsp. strangulata]6.3e-1937.98Show/hide
Query:  KGSKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYE
        +  ++ K+ +A++K+DMSKAYD+VEW FL ++M ++GF   WIK + +C+ +VS+   +NG C++      GLRQDD L+ +KA +E    +Q +L +YE
Subjt:  KGSKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYE

Query:  AV--QIVNFDKSEGWKGKLFSTTRKEVLI
            Q VN+DKS     K     +K+ ++
Subjt:  AV--QIVNFDKSEGWKGKLFSTTRKEVLI

TrEMBL top hitse value%identityAlignment
A0A1R3HS68 Reverse transcriptase2.2e-1745.53Show/hide
Query:  KSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVY--EA
        KS K+    +K+DM+KAYDRVEW FL+ +M ++GF+S W+  I  CV ++S++++ING  S+ F  + GLRQDDSL FLKA  E    M  I++ Y   +
Subjt:  KSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVY--EA

Query:  VQIVNFDKSEGWKGKLFSTTRKE
         Q  NF KS    G  FST   E
Subjt:  VQIVNFDKSEGWKGKLFSTTRKE

A0A2N9IXK4 RNase H domain-containing protein3.4e-1840.4Show/hide
Query:  FASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQ--------------DDSLLFLKAQKEEFDEMQQI
        F ++K+DMSKAYDRVEW FL+ IM +MGF++ W+  +  C+ +VSFSILING     F+ + GLRQ              DDSLLF +A +++ + + QI
Subjt:  FASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQ--------------DDSLLFLKAQKEEFDEMQQI

Query:  LKVYEAV--QIVNFDKSEGWKGKLFSTT--------------RKEVLIQAV
        L +YEA   Q VN DK++ +  K   T+              ++E+LI+AV
Subjt:  LKVYEAV--QIVNFDKSEGWKGKLFSTT--------------RKEVLIQAV

A0A453KYM4 Reverse transcriptase domain-containing protein3.7e-1747.71Show/hide
Query:  KSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYEAV-
        KS +  +A+IK++MSKAYDRVEW FL+ IM ++GF+  W++ +  CV +V + I ING  +E      GL QDDSLL L+A      E+ QIL VYEA  
Subjt:  KSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYEAV-

Query:  -QIVNFDKS
         Q++N +KS
Subjt:  -QIVNFDKS

A0A453KYT5 Uncharacterized protein2.2e-1747.32Show/hide
Query:  KGSKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYE
        K  KS +  +A+IK++MSKAYDRVEW FL+ IM ++GF+  W++ +  CV +V + I ING  +E      GL QDDSLL L+A      E+ QIL VYE
Subjt:  KGSKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYE

Query:  AV--QIVNFDKS
        A   Q++N +KS
Subjt:  AV--QIVNFDKS

A0A803QI02 Uncharacterized protein3.3e-2152.68Show/hide
Query:  SIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYEAV--QIVNFDK
        ++K+DMSKAYDRVEW FLR +M  +G+   WI++I  CVESV+FS+LING     F+ T GLRQDDS +FL A++ E D M+ IL+ Y  +  Q VN +K
Subjt:  SIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYEAV--QIVNFDK

Query:  SEGWKGKLFSTT
        SE   GK  S+T
Subjt:  SEGWKGKLFSTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGACCTCCGTCCCTACATAAAGGATCTAAATCTATGAAAAATTGTTTTGCATCCATAAAAGTGGACATGAGTAAAGCATATGACAGAGTGGAGTGGACCTTTCT
TAGAAGAATTATGGCAAGAATGGGCTTTAGTTCTTTTTGGATTAAGAGAATTGACATGTGTGTAGAGTCTGTGTCTTTTTCGATTCTTATTAATGGCATCTGTTCTGAAA
CATTTAAATCCACCCTAGGGCTTCGACAAGATGATAGCCTTCTTTTCCTTAAAGCGCAAAAAGAGGAATTTGATGAGATGCAACAAATCCTGAAAGTATATGAGGCAGTT
CAGATTGTCAATTTTGATAAATCGGAGGGCTGGAAAGGAAAGCTATTCTCCACGACTAGAAAGGAGGTGTTGATTCAGGCAGTAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGACCTCCGTCCCTACATAAAGGATCTAAATCTATGAAAAATTGTTTTGCATCCATAAAAGTGGACATGAGTAAAGCATATGACAGAGTGGAGTGGACCTTTCT
TAGAAGAATTATGGCAAGAATGGGCTTTAGTTCTTTTTGGATTAAGAGAATTGACATGTGTGTAGAGTCTGTGTCTTTTTCGATTCTTATTAATGGCATCTGTTCTGAAA
CATTTAAATCCACCCTAGGGCTTCGACAAGATGATAGCCTTCTTTTCCTTAAAGCGCAAAAAGAGGAATTTGATGAGATGCAACAAATCCTGAAAGTATATGAGGCAGTT
CAGATTGTCAATTTTGATAAATCGGAGGGCTGGAAAGGAAAGCTATTCTCCACGACTAGAAAGGAGGTGTTGATTCAGGCAGTAGCATAG
Protein sequenceShow/hide protein sequence
MSGPPSLHKGSKSMKNCFASIKVDMSKAYDRVEWTFLRRIMARMGFSSFWIKRIDMCVESVSFSILINGICSETFKSTLGLRQDDSLLFLKAQKEEFDEMQQILKVYEAV
QIVNFDKSEGWKGKLFSTTRKEVLIQAVA