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Lag0028598 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028598
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:26053531..26054004
RNA-Seq ExpressionLag0028598
SyntenyLag0028598
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]6.2e-1530.34Show/hide
Query:  LSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTF
        L+ +E+  +      + E   +  NCLIGK++++R +N+E  R  M  VW    GL +  I +NLF+   +S   ++R+ +++P  F+  L++LK+   +
Subjt:  LSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTF

Query:  NLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRIDT
        +  E++  D   F  Q H LPLG  N+ + +      G V+ IDT
Subjt:  NLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRIDT

OMP10859.1 hypothetical protein COLO4_04212 [Corchorus olitorius]6.2e-1535.83Show/hide
Query:  CLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLPLGLR
        CLIGK++++R +NIE  R  +  VW    GL I  + D LF+   +    +DR+ ++SP  F+  L++L     F   E +  +E  F VQ H LPLGL 
Subjt:  CLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLPLGLR

Query:  NDIVAQTPDSRLGIVQRIDT
        N+ + +   S +G+V+ +DT
Subjt:  NDIVAQTPDSRLGIVQRIDT

TXG57282.1 hypothetical protein EZV62_018595 [Acer yangbiense]1.3e-1535.77Show/hide
Query:  KLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLP
        +L  CL+GK++A +++N EAFR  +K++W    G+ I+ IEDN+F    +S+E R RIL   P  FDG +I+ + P        M F++ +F VQ H+LP
Subjt:  KLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLP

Query:  LGLRNDIVAQTPDSRLGIVQRID
        L    + +     + +G V+ +D
Subjt:  LGLRNDIVAQTPDSRLGIVQRID

XP_018839072.2 uncharacterized protein LOC109004822 [Juglans regia]1.1e-1433.56Show/hide
Query:  LELSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPT
        L+L+ +E+  I  SE  + +   K  N L+GK+++ R +N E  R TMKK+W      V  NI  N+F+I+ ++ + R+R+LE  P  FD  L +LK   
Subjt:  LELSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPT

Query:  TFNLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRID
            P++M FD  +F V  ++LPL   +  V     + +G V+ +D
Subjt:  TFNLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRID

XP_040990949.1 uncharacterized protein LOC121238174 [Juglans microcarpa x Juglans regia]6.2e-1532.05Show/hide
Query:  DIIEKRMALELSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGN
        D+ E      L+ +E   I  ++  ++ N  + + CL+G+++A + IN EAF+ TM KVW  C G  I  + DNL++   Q+    +RI    P  FD N
Subjt:  DIIEKRMALELSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGN

Query:  LILLKAPTTFNLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRIDTN
        L+ LK       P E+ F+     VQ H+LPLG  N  +     S +G V  ++ +
Subjt:  LILLKAPTTFNLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRIDTN

TrEMBL top hitse value%identityAlignment
A0A1R3GTB5 Reverse transcriptase3.0e-1530.34Show/hide
Query:  LSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTF
        L+ +E+  +      + E   +  NCLIGK++++R +N+E  R  M  VW    GL +  I +NLF+   +S   ++R+ +++P  F+  L++LK+   +
Subjt:  LSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTF

Query:  NLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRIDT
        +  E++  D   F  Q H LPLG  N+ + +      G V+ IDT
Subjt:  NLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRIDT

A0A1R3KUZ6 DUF4283 domain-containing protein3.0e-1535.83Show/hide
Query:  CLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLPLGLR
        CLIGK++++R +NIE  R  +  VW    GL I  + D LF+   +    +DR+ ++SP  F+  L++L     F   E +  +E  F VQ H LPLGL 
Subjt:  CLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLPLGLR

Query:  NDIVAQTPDSRLGIVQRIDT
        N+ + +   S +G+V+ +DT
Subjt:  NDIVAQTPDSRLGIVQRIDT

A0A2I4G596 uncharacterized protein LOC1090048225.1e-1533.56Show/hide
Query:  LELSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPT
        L+L+ +E+  I  SE  + +   K  N L+GK+++ R +N E  R TMKK+W      V  NI  N+F+I+ ++ + R+R+LE  P  FD  L +LK   
Subjt:  LELSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPT

Query:  TFNLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRID
            P++M FD  +F V  ++LPL   +  V     + +G V+ +D
Subjt:  TFNLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRID

A0A5C7HLR9 DUF4283 domain-containing protein6.1e-1635.77Show/hide
Query:  KLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLP
        +L  CL+GK++A +++N EAFR  +K++W    G+ I+ IEDN+F    +S+E R RIL   P  FDG +I+ + P        M F++ +F VQ H+LP
Subjt:  KLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLP

Query:  LGLRNDIVAQTPDSRLGIVQRID
        L    + +     + +G V+ +D
Subjt:  LGLRNDIVAQTPDSRLGIVQRID

A0A5C7IVH7 DUF4283 domain-containing protein1.1e-1435.82Show/hide
Query:  MDIIEKRMALELSLKESCGINTSEVSLQENHTK-LQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFD
        +DI     AL +  KES  +   +V L++   K L  CL+GK++  +++N +AFR  +K++W    G+ I+ IEDN+F     ++E R R+    P  FD
Subjt:  MDIIEKRMALELSLKESCGINTSEVSLQENHTK-LQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFD

Query:  GNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLPL
          +ILL+ PT       M F+  +F VQ H+LPL
Subjt:  GNLILLKAPTTFNLPEEMIFDEAQFCVQFHHLPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATAATCGAAAAACGTATGGCTCTCGAGCTTTCACTAAAGGAATCTTGTGGAATAAACACATCAGAGGTTAGTCTGCAAGAGAATCATACTAAGCTTCAAAACTG
TCTGATAGGGAAGATTGTTGCTCAAAGAATTATAAACATTGAAGCTTTTAGGAAAACTATGAAAAAAGTGTGGAATTTTTGTTGTGGGTTAGTCATCGATAATATTGAAG
ACAACCTATTTCTAATAAACCCGCAATCTGTTGAGGGAAGGGATAGAATTTTGGAAGAGAGCCCGGGGTGTTTCGATGGAAATTTGATTCTTCTTAAAGCTCCAACAACC
TTCAATCTGCCAGAAGAAATGATTTTTGATGAAGCACAGTTCTGTGTTCAATTCCACCATTTACCTCTTGGTCTACGAAACGACATTGTGGCACAAACGCCCGATAGCCG
GTTAGGGATAGTACAGAGGATAGATACTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATATAATCGAAAAACGTATGGCTCTCGAGCTTTCACTAAAGGAATCTTGTGGAATAAACACATCAGAGGTTAGTCTGCAAGAGAATCATACTAAGCTTCAAAACTG
TCTGATAGGGAAGATTGTTGCTCAAAGAATTATAAACATTGAAGCTTTTAGGAAAACTATGAAAAAAGTGTGGAATTTTTGTTGTGGGTTAGTCATCGATAATATTGAAG
ACAACCTATTTCTAATAAACCCGCAATCTGTTGAGGGAAGGGATAGAATTTTGGAAGAGAGCCCGGGGTGTTTCGATGGAAATTTGATTCTTCTTAAAGCTCCAACAACC
TTCAATCTGCCAGAAGAAATGATTTTTGATGAAGCACAGTTCTGTGTTCAATTCCACCATTTACCTCTTGGTCTACGAAACGACATTGTGGCACAAACGCCCGATAGCCG
GTTAGGGATAGTACAGAGGATAGATACTAATTAA
Protein sequenceShow/hide protein sequence
MDIIEKRMALELSLKESCGINTSEVSLQENHTKLQNCLIGKIVAQRIINIEAFRKTMKKVWNFCCGLVIDNIEDNLFLINPQSVEGRDRILEESPGCFDGNLILLKAPTT
FNLPEEMIFDEAQFCVQFHHLPLGLRNDIVAQTPDSRLGIVQRIDTN