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Lag0028620 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028620
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr8:26618595..26619359
RNA-Seq ExpressionLag0028620
SyntenyLag0028620
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6636592.1 hypothetical protein CIPAW_11G121200 [Carya illinoinensis]1.6e-1750.57Show/hide
Query:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW
        D   WRFTGLYG+ + S++  TWNL+R+LS+   LPWL+GGDLNE+L+  EK  G  R +  +  FRE L ECEL+D+  +   FTW
Subjt:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW

XP_012854346.1 PREDICTED: uncharacterized protein LOC105973839 [Erythranthe guttata]3.5e-1755.81Show/hide
Query:  NFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW
        N +WR TG YG+ E S++  +WNLLR+L    DLPWLIGGD NEIL + EK  GP+R    +  FREALDEC L DM  E   FTW
Subjt:  NFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW

XP_030939479.1 uncharacterized protein LOC115964277 [Quercus lobata]6.0e-1746.67Show/hide
Query:  WRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTWHG--FPTLSLETLLQPL
        WRFTG+YG+LEAS+K  TWNLLR+L     LPWL  GD NEIL   EKL G  R    +  FRE +D+C   D+      +TW G    T+ LE L + L
Subjt:  WRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTWHG--FPTLSLETLLQPL

Query:  NPDPW
            W
Subjt:  NPDPW

XP_042950313.1 uncharacterized protein LOC122282426 [Carya illinoinensis]1.6e-1750.57Show/hide
Query:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW
        D   WRFTGLYG+ + S++  TWNL+R+LS+   LPWL+GGDLNE+L+  EK  G  R +  +  FRE L ECEL+D+  +   FTW
Subjt:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW

XP_042980077.1 uncharacterized protein LOC122310261 [Carya illinoinensis]4.6e-1749.43Show/hide
Query:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW
        D   WRFTGLYG+ +A ++  TWNL+R+LS+   +PWL+GGDLNE+L+  EK  G  R +  +  FRE L ECEL+D+  +   FTW
Subjt:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW

TrEMBL top hitse value%identityAlignment
A0A1R3J6U3 Ribonuclease H3.2e-1645.88Show/hide
Query:  QWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTWH
        +WRFTG+YG  E  ++  TW+LLR+L+  + LPWL  GD NEIL ++EKL G  R  + +  FREA+++CELK++ ++    TW+
Subjt:  QWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTWH

A0A2N9FBV3 Reverse transcriptase domain-containing protein3.2e-1642.73Show/hide
Query:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW---HGFPTLSLET
        D+ QWRFTG YG  EA ++  +WNLLR L+  N LPWL+ GD NEI+   EKL    R    +RNFR AL +CEL D+  +   +TW    G+P +    
Subjt:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW---HGFPTLSLET

Query:  LLQPLNPDPW
        L + ++   W
Subjt:  LLQPLNPDPW

A0A2P6SDG4 Putative RNA-directed DNA polymerase8.5e-1747.06Show/hide
Query:  WRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTWHG
        WRFTG+YG+ +A ++ RTWNLL+ LS H +LPW++GGD NEI    +K+ G  R ++ + + +EAL  CEL D++     FTW G
Subjt:  WRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTWHG

A0A6J1DRA0 uncharacterized protein LOC1110224235.5e-1644.83Show/hide
Query:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW
        D + WRFTG+YG+L    ++ TW L+  L +  DLPW++GGD NEIL++ EKL+G  R    ++NF++ LD C L D     ++FTW
Subjt:  DNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW

A0A7N2KQ83 Uncharacterized protein7.2e-1651.81Show/hide
Query:  WRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW
        WRFTG YG LE   +  +WNLLR L+N   +PWL GGD NE+L   EK+ G  R    +R F EALDEC L D+    N FTW
Subjt:  WRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATTTTCAGTGGAGATTTACAGGGCTTTATGGATACCTAGAAGCAAGTCAGAAATTCAGAACTTGGAATCTTCTTCGTTCTTTAAGTAATCATAATGATCTCCC
ATGGTTAATAGGAGGTGACCTAAATGAGATTCTCTATGATGAAGAGAAGTTGGATGGCCCAAAAAGAGATATCAAGTTTCTGAGGAACTTCAGAGAGGCCTTAGACGAAT
GCGAGTTAAAGGATATGAAGCTTGAAGAGAACTTGTTTACTTGGCATGGTTTTCCAACCCTTAGCCTAGAGACGCTACTTCAACCCTTAAACCCTGATCCATGGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAATTTTCAGTGGAGATTTACAGGGCTTTATGGATACCTAGAAGCAAGTCAGAAATTCAGAACTTGGAATCTTCTTCGTTCTTTAAGTAATCATAATGATCTCCC
ATGGTTAATAGGAGGTGACCTAAATGAGATTCTCTATGATGAAGAGAAGTTGGATGGCCCAAAAAGAGATATCAAGTTTCTGAGGAACTTCAGAGAGGCCTTAGACGAAT
GCGAGTTAAAGGATATGAAGCTTGAAGAGAACTTGTTTACTTGGCATGGTTTTCCAACCCTTAGCCTAGAGACGCTACTTCAACCCTTAAACCCTGATCCATGGAACTGA
Protein sequenceShow/hide protein sequence
MDNFQWRFTGLYGYLEASQKFRTWNLLRSLSNHNDLPWLIGGDLNEILYDEEKLDGPKRDIKFLRNFREALDECELKDMKLEENLFTWHGFPTLSLETLLQPLNPDPWN