; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028631 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028631
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr8:26916054..26916545
RNA-Seq ExpressionLag0028631
SyntenyLag0028631
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-3964.24Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SAFQR+SMA  EEENQC  ST  R SAF+R+S+STSKK RPSTS FDRLK+T+ Q +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS
         K++S + SRMKRK SV INTEGSL VKP  II T+PI++G  +  DE+KS
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-3963.58Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EEENQC  ST  R SAF+R+S+STSKK RPSTS FDRLK+T+ Q +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS
         K+ S + SRMKRK SV INTEGSL VKP  II T+PI++G ++  DE+KS
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-3962.5Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EEENQC MST TR SAF+R+S+S SKK RPSTS FDRLK+T+ Q +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKSF
         K+ S + SR+KRK S+ INTEGSL VKP  II T+PI++G ++  DE+K F
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKSF

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-3862.25Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EE+NQC  ST  R SAF+R+S+STSKK RPSTS FDRLK+T+ Q +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS
         K+ + + SRMKRK SV INTEGSL VKP  II T+PI++G ++  DE+KS
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-3862.91Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR   FQR+SMA  EEENQC  ST  R SAF+R+S+STSKK RPSTS FDRLK+T+ Q KR+M + + K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS
         K+ S + SRMKRK SV INTEGSL VKP  II T+PI++G ++  DE+KS
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein1.8e-3964.24Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SAFQR+SMA  EEENQC  ST  R SAF+R+S+STSKK RPSTS FDRLK+T+ Q +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS
         K++S + SRMKRK SV INTEGSL VKP  II T+PI++G  +  DE+KS
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS

A0A5A7TQ06 Retrotransposon gag protein4.1e-3963.58Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EEENQC  ST  R SAF+R+S+STSKK RPSTS FDRLK+T+ Q +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS
         K+ S + SRMKRK SV INTEGSL VKP  II T+PI++G ++  DE+KS
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS

A0A5A7U974 Retrotransposon gag protein4.1e-3962.5Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EEENQC MST TR SAF+R+S+S SKK RPSTS FDRLK+T+ Q +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKSF
         K+ S + SR+KRK S+ INTEGSL VKP  II T+PI++G ++  DE+K F
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKSF

A0A5A7UI09 Retrotransposon gag protein1.5e-3862.25Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EE+NQC  ST  R SAF+R+S+STSKK RPSTS FDRLK+T+ Q +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS
         K+ + + SRMKRK SV INTEGSL VKP  II T+PI++G ++  DE+KS
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS

A0A5D3D209 Retrotransposon gag protein1.2e-3862.91Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR   FQR+SMA  EEENQC  ST  R SAF+R+S+STSKK RPSTS FDRLK+T+ Q KR+M + + K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS
         K+ S + SRMKRK SV INTEGSL VKP  II T+PI++G ++  DE+KS
Subjt:  KKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTTGCGACTTCGTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCC
TTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGGTAAGTGTCTCCACATCGA
AGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTTGATGAAGTAAACAGC
GATAAGAAGCTTCAAAGTAGTATCCTGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAG
TCCTATAAGTCAAGGACCTGATCAAGACCATGATGAAGATAAGAGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTTGCGACTTCGTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCC
TTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGGTAAGTGTCTCCACATCGA
AGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTTGATGAAGTAAACAGC
GATAAGAAGCTTCAAAGTAGTATCCTGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAG
TCCTATAAGTCAAGGACCTGATCAAGACCATGATGAAGATAAGAGCTTTTAA
Protein sequenceShow/hide protein sequence
MNFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSMSTSTRPSAFQRVSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNS
DKKLQSSILSRMKRKFSVLINTEGSLKVKPNLIILTSPISQGPDQDHDEDKSF