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Lag0028636 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028636
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:27040541..27041853
RNA-Seq ExpressionLag0028636
SyntenyLag0028636
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8364690.1 hypothetical protein BUALT_Bualt18G0024700 [Buddleja alternifolia]2.3e-1840.27Show/hide
Query:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA
        + +S AS HI   R +FT +T G+ G VRM N   ++   +G+++L+T+ G +L+LRD+R +PNI++N IS GKL DDGY+  FG  + KL  GS L  A
Subjt:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA

Query:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK
        KG K+  + +  A  S  G V  AV  ++ +        HK+LG L +K
Subjt:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK

KAG8367017.1 hypothetical protein BUALT_Bualt16G0028600 [Buddleja alternifolia]8.8e-1840.94Show/hide
Query:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA
        + +S AS HI   R +FT +T G+ G VRM N   ++   +G+++L+T+ G +L+LRD+R++PNI++N IS GKL DDGY+  FG  + KL  GS L  A
Subjt:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA

Query:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK
        K  K+  + +  A  S  G V  AV   NF         HK+LG L +K
Subjt:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK

KAG8370326.1 hypothetical protein BUALT_Bualt14G0105200 [Buddleja alternifolia]8.8e-1839.6Show/hide
Query:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA
        + +S AS HI   R +FT +T G+ G VRM N   ++   +G+++L+T+ G +L+LRD+R +P+I++N IS GKL DDGY+  FG  + KL  GS L  A
Subjt:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA

Query:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK
        KG K+  + +  A  S  G V  AV  ++ +        HK+LG L +K
Subjt:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK

KAG8370951.1 hypothetical protein BUALT_Bualt13G0036600 [Buddleja alternifolia]8.8e-1834.92Show/hide
Query:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA
        + +S AS HI   R +FT +T G+ G VRM N   ++   +G+++L+T+ G +L+LRD+R +P+I++N IS GKL DDGY+  FG  + KL  GS L  A
Subjt:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA

Query:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK-------------VDGYHKSPVVKCSNELKKSLRRVEASK
        KG K+  + +  A  S  G V  AV  ++ +        HK+LG L +K             V+G      V C    +  + R E+S+
Subjt:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK-------------VDGYHKSPVVKCSNELKKSLRRVEASK

KAG8382584.1 hypothetical protein BUALT_Bualt05G0092800 [Buddleja alternifolia]8.8e-1839.6Show/hide
Query:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA
        + +S AS HI   R +FT +T G+ G VRM N   ++   +G+++L+T+ G +L+LRD+R +P+I++N IS GKL DDGY+  FG  + KL  GS L  A
Subjt:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA

Query:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK
        KG K+  + +  A  S  G V  AV  ++ +        HK+LG L +K
Subjt:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK

TrEMBL top hitse value%identityAlignment
A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-1636.36Show/hide
Query:  LLMDVASLVAHETIAVKLM----EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKL
        ++ D   ++  + ++V L+    + + +S AS H+ S    FT ++ G  G VRMGN   SK   +GD+ L+T  G KL+LRD+R VP+I++N IS GKL
Subjt:  LLMDVASLVAHETIAVKLM----EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKL

Query:  ADDGYMCEFGSRQCKLEIGSQLNVAKGSKR-QWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSV-HKQLGSLGEK
         D+GY   F   + KL  GS L VAKG K      V+A  C C         + N  ++D    + H++LG + EK
Subjt:  ADDGYMCEFGSRQCKLEIGSQLNVAKGSKR-QWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSV-HKQLGSLGEK

A0A438E432 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-1636.36Show/hide
Query:  LLMDVASLVAHETIAVKLM----EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKL
        ++ D   ++  + ++V L+    + + +S AS H+ S    FT ++ G  G VRMGN   SK   +GD+ L+T  G KL+LRD+R VP+I++N IS GKL
Subjt:  LLMDVASLVAHETIAVKLM----EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKL

Query:  ADDGYMCEFGSRQCKLEIGSQLNVAKGSKR-QWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSV-HKQLGSLGEK
         D+GY   F   + KL  GS L VAKG K      V+A  C C         + N  ++D    + H++LG + EK
Subjt:  ADDGYMCEFGSRQCKLEIGSQLNVAKGSKR-QWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSV-HKQLGSLGEK

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-1636.36Show/hide
Query:  LLMDVASLVAHETIAVKLM----EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKL
        ++ D   ++  + ++V L+    + + +S AS H+ S    FT ++ G  G VRMGN   SK   +GD+ L+T  G KL+LRD+R VP+I++N IS GKL
Subjt:  LLMDVASLVAHETIAVKLM----EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKL

Query:  ADDGYMCEFGSRQCKLEIGSQLNVAKGSKR-QWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSV-HKQLGSLGEK
         D+GY   F   + KL  GS L VAKG K      V+A  C C         + N  ++D    + H++LG + EK
Subjt:  ADDGYMCEFGSRQCKLEIGSQLNVAKGSKR-QWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSV-HKQLGSLGEK

A0A438IBT7 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-1636.36Show/hide
Query:  LLMDVASLVAHETIAVKLM----EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKL
        ++ D   ++  + ++V L+    + + +S AS H+ S    FT ++ G  G VRMGN   SK   +GD+ L+T  G KL+LRD+R VP+I++N IS GKL
Subjt:  LLMDVASLVAHETIAVKLM----EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKL

Query:  ADDGYMCEFGSRQCKLEIGSQLNVAKGSKR-QWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSV-HKQLGSLGEK
         D+GY   F   + KL  GS L VAKG K      V+A  C C         + N  ++D    + H++LG + EK
Subjt:  ADDGYMCEFGSRQCKLEIGSQLNVAKGSKR-QWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSV-HKQLGSLGEK

A0A4D8YHC2 CCHC-type domain-containing protein4.2e-1838.98Show/hide
Query:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA
        + +S AS HI   R +F  +TGG  G VRM N   ++   IGD+ L T+ G KLVLRD+R VP+I++N IS GKL DDGY+  FG  + KL  GS L  A
Subjt:  LTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLNVA

Query:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK-------------VDGYHKSPVVKCSNE
        KG K+  + +  A  S  G V   V+ ++ +        HK+LG L +K             V G H    V C  E
Subjt:  KGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK-------------VDGYHKSPVVKCSNE

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-1437.09Show/hide
Query:  EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLN
        E + ++AAS H    R LF  +  G  G V+MGN   SK   IGD+ +KT  G  LVL+D+R VP+++MN IS   L  DGY   F +++ +L  GS L 
Subjt:  EALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNFISIGKLADDGYMCEFGSRQCKLEIGSQLN

Query:  VAKGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK
        +AKG  R  +    A   C+G +  A    + D        HK++G + EK
Subjt:  VAKGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGACGAAGATTCGGAAGCTCTGGATGAAGAGACAGTTGCAACCATAAGGATGTGTTTGTTAATGGATGTGGCAAGTCTAGTGGCTCATGAGACAATTGCAGTTAA
ATTGATGGAAGCGCTTACAAACAGTGCAGCTTCAATTCACATAGCTTCAGATAGGAGTTTGTTCACATTATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGGAATG
GTAGAACCTCCAAGACTAGAAGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGGTAAATTGGTACTGCGAGATATTAGGTTCGTGCCTAATATCAAGATGAATTTT
ATTTCTATCGGTAAGTTGGCAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCGAGATCGGATCCCAGTTGAATGTTGCCAAAGGTTCAAAGAGACA
ATGGATGCCGGTTAAAGCTGCAAATTGTAGTTGTAGAGGTATAGTTGAGCCAGCAGTAAGGATAGCCAATTTCGATCAGTCCGATCAAGATCCTTCAGTTCATAAACAAT
TGGGAAGTCTAGGAGAGAAAGTTGATGGCTATCATAAATCCCCAGTTGTTAAATGCTCGAATGAATTGAAGAAGTCACTCAGGCGAGTTGAGGCATCAAAGTGGAAGGCC
AGAGCAGTTGACCACAAAGATTGGAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGACGAAGATTCGGAAGCTCTGGATGAAGAGACAGTTGCAACCATAAGGATGTGTTTGTTAATGGATGTGGCAAGTCTAGTGGCTCATGAGACAATTGCAGTTAA
ATTGATGGAAGCGCTTACAAACAGTGCAGCTTCAATTCACATAGCTTCAGATAGGAGTTTGTTCACATTATTCACAGGAGGGCATCATGGCCTAGTGAGGATGGGGAATG
GTAGAACCTCCAAGACTAGAAGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGGTAAATTGGTACTGCGAGATATTAGGTTCGTGCCTAATATCAAGATGAATTTT
ATTTCTATCGGTAAGTTGGCAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCGAGATCGGATCCCAGTTGAATGTTGCCAAAGGTTCAAAGAGACA
ATGGATGCCGGTTAAAGCTGCAAATTGTAGTTGTAGAGGTATAGTTGAGCCAGCAGTAAGGATAGCCAATTTCGATCAGTCCGATCAAGATCCTTCAGTTCATAAACAAT
TGGGAAGTCTAGGAGAGAAAGTTGATGGCTATCATAAATCCCCAGTTGTTAAATGCTCGAATGAATTGAAGAAGTCACTCAGGCGAGTTGAGGCATCAAAGTGGAAGGCC
AGAGCAGTTGACCACAAAGATTGGAGATAA
Protein sequenceShow/hide protein sequence
MTDEDSEALDEETVATIRMCLLMDVASLVAHETIAVKLMEALTNSAASIHIASDRSLFTLFTGGHHGLVRMGNGRTSKTRRIGDVSLKTECGGKLVLRDIRFVPNIKMNF
ISIGKLADDGYMCEFGSRQCKLEIGSQLNVAKGSKRQWMPVKAANCSCRGIVEPAVRIANFDQSDQDPSVHKQLGSLGEKVDGYHKSPVVKCSNELKKSLRRVEASKWKA
RAVDHKDWR