; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028652 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028652
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:27500727..27501695
RNA-Seq ExpressionLag0028652
SyntenyLag0028652
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]4.3e-4749.17Show/hide
Query:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF
        +  VL  +  TV++  N +L++EFTR E+E  L  + PTKAPGPDG++A+F+Q++W+++G++     L +LN   S+ E+N T++ L+PKIK PT + DF
Subjt:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF

Query:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
         PISLCNVVY +++KV+ANRLK +L  ++S+ QS F+ GRLI+ N ++ FE +H L  K  GK G   +KLDMSKAYDRVE
Subjt:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

XP_030923330.1 uncharacterized protein LOC115950239 [Quercus lobata]1.1e-4549.72Show/hide
Query:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF
        ++  L  V   V++   + L  +FT  EV+A L  +GPTKAPGPDG+NALFYQ+ W ++GD   +  L  LN G  + E+NHT++VLIPK++ P  + +F
Subjt:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF

Query:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
         PISLCNV+Y I++KV+ANRLK VL  ++S  QS FV GRLI+ N ++ +E LH + ++ +GK G+V +KLD+SKAYDRVE
Subjt:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

XP_030939512.1 uncharacterized protein LOC115964316 [Quercus lobata]5.3e-4552.49Show/hide
Query:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF
        ++ V R VTP + D     L  EF+  EV+  L  +GPTKAPGPDG+NALFYQR W ++GD      L  LN G  + ++NHT++VLIPK+K P  + DF
Subjt:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF

Query:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
         PISLCNV+Y I++KV+ANRLK VL S++S  QS FV GRLI+ N +I +E LH +  + +GK G + +KLD+SKAYDRVE
Subjt:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

XP_038708495.1 uncharacterized protein LOC120003549 [Tripterygium wilfordii]1.8e-4551.4Show/hide
Query:  TVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDFHP
        +++  VT  V+D  N++LLR F+ AEV  +L  + P KAPG DG+NALFY RHWD++  E + FCL +LNGG S+ E+N T++ LIPK+  P  +  F P
Subjt:  TVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDFHP

Query:  ISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
        ISLCNV+Y IVAK IANRL+ +L  ++S+ QS FV G+LIS N ++ +E LH+L ++  G  G   +KL MSKAYDRVE
Subjt:  ISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

XP_042974747.1 uncharacterized protein LOC122306384 [Carya illinoinensis]1.3e-4649.46Show/hide
Query:  PRQVAVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPT
        P Q  +   L+ V P V++  N+ L ++FTR E+E  +K +GP K+PGPDG+ A FYQ HW ++GD  S   L+ILN G     +N+TH+ LIPK+K P+
Subjt:  PRQVAVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPT

Query:  SVQDFHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
         V ++ PISLCNVVY IV+K IANR K VL  ++S  QS F+ GRLIS N +I +E  HA+ ++ +G+ G++ +KLDMSKAYDR+E
Subjt:  SVQDFHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

TrEMBL top hitse value%identityAlignment
A0A2N9G6K5 Uncharacterized protein1.9e-4850.83Show/hide
Query:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF
        V+ V  C+TP V+   N++L++EFT AEV   LK + P KAPGPDG+  +F+Q++W LIG++ +   L+ LN G  ++ +NHTH+ LIPK+K P  V++F
Subjt:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF

Query:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
         PISLCNV+Y +++KV+ NRLK +L  +VS+ QS FV GRLI+ N ++ FE LH +  + +GKTG + +KLDMSKAYDRVE
Subjt:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

A0A2N9GPZ7 Reverse transcriptase domain-containing protein2.2e-4952.15Show/hide
Query:  PRQVAVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPT
        P   ++ TVL+ +   V++  N  L  EFT+ EV   LK + PTKAPGPDG++A+FYQ +WD++G E +   LSIL+ G  +R++N+TH+ LIPK+K P 
Subjt:  PRQVAVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPT

Query:  SVQDFHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
        ++ DF PISLCNV+Y IV+KV+ANRLK VL  V+S+ QS FV GRLI+ N ++ FE +H+++ K +GK G + +KLDMSKAYDRVE
Subjt:  SVQDFHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

A0A2N9GZJ9 Reverse transcriptase domain-containing protein8.5e-4950.83Show/hide
Query:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF
        V+ V  C+TP V++  N++L++EFT  EV   LK + P KAPGPDG+  +FYQ++W LIG++ +   L+ LN G  ++ +NHTH+ LIPK+K P  V++F
Subjt:  VDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDF

Query:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
         PISLCNV+Y +++KV+ NRLK +L  +VS+ QS FV GRLI+ N ++ FE LH +  + +GKTG + +KLDMSKAYDRVE
Subjt:  HPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

A0A2N9IPS8 Reverse transcriptase domain-containing protein2.2e-4952.15Show/hide
Query:  PRQVAVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPT
        P   ++ TVL+ +   V++  N  L  EFT+ EV   LK + PTKAPGPDG++A+FYQ +WD++G E +   LSIL+ G  +R++N+TH+ LIPK+K P 
Subjt:  PRQVAVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPT

Query:  SVQDFHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
        ++ DF PISLCNV+Y IV+KV+ANRLK VL  V+S+ QS FV GRLI+ N ++ FE +H+++ K +GK G + +KLDMSKAYDRVE
Subjt:  SVQDFHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

A0A2N9J109 Uncharacterized protein1.3e-4953.3Show/hide
Query:  AVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQD
        ++DTVL+CV   V+D  N+AL + +T +EVE  L+ + P  APGPDG+  +FYQ HW LIG++     LS LN G  VR +NHT++ LIPK+K P  V +
Subjt:  AVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQD

Query:  FHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
        F PISLCNV+Y I++KV+ANRLK +L  ++S+ QS FVLGRLI+ N ++ FE LH + S  +GK G++ +KLDMSKAYDRVE
Subjt:  FHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein9.4e-1328.8Show/hide
Query:  VDTVLRCVT-PTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKI-KGPTSVQ
        +DT L   T P ++  + ++L R  T +E+ A + S+   K+PGPDG  A FYQR+ + +         SI   G          ++LIPK  +  T  +
Subjt:  VDTVLRCVT-PTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKI-KGPTSVQ

Query:  DFHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGN-VTMKLDMSKAYDRVE
        +F PISL N+   I+ K++ANR++  +  ++  +Q  F+ G    +N     + ++ +    R K  N V + +D  KA+D+++
Subjt:  DFHPISLCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGN-VTMKLDMSKAYDRVE

P08548 LINE-1 reverse transcriptase homolog6.7e-1125.14Show/hide
Query:  CVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKI-KGPTSVQDFHPISL
        C  P +S  + + L R  + +E+ +T++++   K+PGPDG  + FYQ   + +         +I   G         ++ LIPK  K PT  +++ PISL
Subjt:  CVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKI-KGPTSVQDFHPISL

Query:  CNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYN---AIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
         N+   I+ K++ NR++  +  ++  +Q  F+ G    +N   +I   + ++ L +K      ++ + +D  KA+D ++
Subjt:  CNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYN---AIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

P11369 LINE-1 retrotransposable element ORF2 protein3.6e-1228.25Show/hide
Query:  RCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPK-IKGPTSVQDFHPIS
        R   P ++  Q   L    +  E+EA + S+   K+PGPDG +A FYQ   + +          I   G          + LIPK  K PT +++F PIS
Subjt:  RCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPK-IKGPTSVQDFHPIS

Query:  LCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
        L N+   I+ K++ANR++  + +++  +Q  F+ G    +N       +H + +K + K  ++ + LD  KA+D+++
Subjt:  LCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

P14381 Transposon TX1 uncharacterized 149 kDa protein3.8e-1431.4Show/hide
Query:  PTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDFHPISLCNVV
        P VS+ + + L    T  E+   L+ +   K+PG DG+   F+Q  WD +G +           G          L L+PK      ++++ P+SL +  
Subjt:  PTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDFHPISLCNVV

Query:  YIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE
        Y IVAK I+ RLK VL  V+  +QS  V GR I  N  +  + LH      R       + LD  KA+DRV+
Subjt:  YIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases1.3e-0432.81Show/hide
Query:  IANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRV
        +  RLK ++ +++   Q++F+ GR+ + N +   E +H++  K +G  G + +KLD+ KAYDR+
Subjt:  IANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGACAGGTGGCAGTCGATACAGTGTTGCGTTGTGTCACTCCTACAGTTAGTGATGTACAGAATCAGGCTTTACTTCGAGAGTTCACTCGGGCTGAGGTAGAGGC
AACCTTGAAAAGTATAGGCCCCACGAAGGCTCCAGGCCCCGATGGGGTTAATGCTCTATTTTACCAACGACACTGGGACTTGATCGGTGACGAGACTTCTGCGTTTTGCC
TTAGTATTCTGAATGGTGGGGGCTCAGTAAGGGAGTTGAATCACACACACTTGGTGTTGATCCCGAAGATAAAGGGTCCTACATCTGTTCAGGACTTTCACCCAATCAGC
TTGTGCAACGTGGTCTATATAATTGTTGCCAAGGTAATCGCGAATCGCCTAAAAGGGGTGCTACATTCGGTAGTCTCTGATGAGCAATCGACTTTTGTGCTTGGGCGCTT
GATCTCATATAATGCGATCATCGGCTTTGAGCGCTTGCACGCGCTTGCTAGTAAAACGAGAGGGAAAACTGGTAATGTGACGATGAAGTTGGATATGAGCAAGGCCTATG
ATCGGGTGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGACAGGTGGCAGTCGATACAGTGTTGCGTTGTGTCACTCCTACAGTTAGTGATGTACAGAATCAGGCTTTACTTCGAGAGTTCACTCGGGCTGAGGTAGAGGC
AACCTTGAAAAGTATAGGCCCCACGAAGGCTCCAGGCCCCGATGGGGTTAATGCTCTATTTTACCAACGACACTGGGACTTGATCGGTGACGAGACTTCTGCGTTTTGCC
TTAGTATTCTGAATGGTGGGGGCTCAGTAAGGGAGTTGAATCACACACACTTGGTGTTGATCCCGAAGATAAAGGGTCCTACATCTGTTCAGGACTTTCACCCAATCAGC
TTGTGCAACGTGGTCTATATAATTGTTGCCAAGGTAATCGCGAATCGCCTAAAAGGGGTGCTACATTCGGTAGTCTCTGATGAGCAATCGACTTTTGTGCTTGGGCGCTT
GATCTCATATAATGCGATCATCGGCTTTGAGCGCTTGCACGCGCTTGCTAGTAAAACGAGAGGGAAAACTGGTAATGTGACGATGAAGTTGGATATGAGCAAGGCCTATG
ATCGGGTGGAATGA
Protein sequenceShow/hide protein sequence
MPRQVAVDTVLRCVTPTVSDVQNQALLREFTRAEVEATLKSIGPTKAPGPDGVNALFYQRHWDLIGDETSAFCLSILNGGGSVRELNHTHLVLIPKIKGPTSVQDFHPIS
LCNVVYIIVAKVIANRLKGVLHSVVSDEQSTFVLGRLISYNAIIGFERLHALASKTRGKTGNVTMKLDMSKAYDRVE