| GenBank top hits | e value | %identity | Alignment |
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| PNY00673.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense] | 1.1e-35 | 42.74 | Show/hide |
Query: CVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSS-PPSSTSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSPSVENTSTN
C+FLGY L Y+CY+ K YIS HV F E++FPF+ ++ PSST +P E P T+ S +S ++P PT + T + P N S
Subjt: CVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSS-PPSSTSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSPSVENTSTN
Query: VIASSPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISK-KRVFAAVSKTLP--EEPTSFTQASEVPNWQTAMIDEYTTL
++ P+++TPE +LS ++ + + P P+ P + H M TRSK+GI K K++F A LP EPT +QA + W+ AM DE+T L
Subjt: VIASSPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISK-KRVFAAVSKTLP--EEPTSFTQASEVPNWQTAMIDEYTTL
Query: INQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
+N TW L P PH VIG KWV+RIKR+PDGSIARYK RLVAKG+HQ
Subjt: INQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| TQD88914.1 hypothetical protein C1H46_025506 [Malus baccata] | 1.9e-38 | 42.08 | Show/hide |
Query: NPSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFP--FALPSS----PPSSTSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFE
+P C+FLGY YKGY+CY +S K +S HVLFDES+FP + L SS SS S+P L P P+ P + P P
Subjt: NPSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFP--FALPSS----PPSSTSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFE
Query: PSPSVENTSTNVIAS-SPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSV--SNHHPMQTRSKSGISKKRVFAAVSKTLPEEPTSFTQASEVPNW
PSV + + P + + SL + E P + ++ H SV SN HPMQTRSKSGI KK+VF+AV +EP SF+ A+ W
Subjt: PSPSVENTSTNVIAS-SPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSV--SNHHPMQTRSKSGISKKRVFAAVSKTLPEEPTSFTQASEVPNW
Query: QTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
+ AM +E LI Q+TW L PLP HK ++GCKW+Y++KR+PDGS+ARYK RLVAKG+ Q
Subjt: QTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| TQE01264.1 hypothetical protein C1H46_013171 [Malus baccata] | 3.6e-37 | 42.59 | Show/hide |
Query: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSEL-LPFVSTDPSFASCNLPSPSFTTPTVQHPTP-ATFEPSPSV
P +C+F+GY YKGYLC + K Y+S HVLFDE+ FP+ SS +S S S + P + P LPS + TV P P E SPS
Subjt: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSEL-LPFVSTDPSFASCNLPSPSFTTPTVQHPTP-ATFEPSPSV
Query: ENTSTNVIAS----------SPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKRVFAA--VSKTLPEEPTSFTQASE
++ S SPT+ T+L + P +P +++ + + HPMQTRSKSGISKK+VF+A S EP +F A +
Subjt: ENTSTNVIAS----------SPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKRVFAA--VSKTLPEEPTSFTQASE
Query: VPNWQTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
+P W AM DE T L +QNTW L PLP K ++GCKWVYRIK +PDGS+ARYK RLVAKGY Q
Subjt: VPNWQTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| TQE09310.1 hypothetical protein C1H46_005046 [Malus baccata] | 4.6e-37 | 40.7 | Show/hide |
Query: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPS----STSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSP
P EC+FLGY YKG++C++ K +S HVLFDE FP SS S S S+ S + P P P F+ + PT P
Subjt: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPS----STSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSP
Query: SVENTSTNVIASSPTNTTPETSL--SHSLPTDIHEPSPSLEPPEINGTDHPSVS--NHHPMQTRSKSGISKKR-VFAAVSKTLPEEPTSFTQASEVPNWQ
S +++SSP + P S+ HS P E P + + + S+ N HPMQTRSKSGISKK+ F+ ++ +EP S++ A ++ +W+
Subjt: SVENTSTNVIASSPTNTTPETSL--SHSLPTDIHEPSPSLEPPEINGTDHPSVS--NHHPMQTRSKSGISKKR-VFAAVSKTLPEEPTSFTQASEVPNWQ
Query: TAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
AM +E T L QNTW L PLPP K ++GCKW+Y+IKRHPDG++ARYK RLVAKG+ Q
Subjt: TAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| WP_081894301.1 DDE-type integrase/transposase/recombinase [Acetobacter malorum] | 4.4e-35 | 39.5 | Show/hide |
Query: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPF----ALPS-------SPPSSTSLPSELLPFVS--TDPSFASCNLPSPSFTTPTVQHP
P V+C+FLGY YKGY+C++ +FY+S HV+F E+ FP+ PS +PPS T L + VS T S AS L P+ + + P
Subjt: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPF----ALPS-------SPPSSTSLPSELLPFVS--TDPSFASCNLPSPSFTTPTVQHP
Query: TPAT-FEPSP---------------SVENTSTNVIASSPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKRVFAAVS
T A+ F SP + + S ++ + SPT S +P D P +P + + HPMQTRSKSGI KK+ F A
Subjt: TPAT-FEPSP---------------SVENTSTNVIASSPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKRVFAAVS
Query: KTLPE---EPTSFTQASEVPNWQTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
++ + EP++F AS++ WQ+AM DE L Q+TW+L PLP K ++GCKWVYR+K++PDGSIARYK RLVAKGY+Q
Subjt: KTLPE---EPTSFTQASEVPNWQTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A2N9FMC6 Integrase catalytic domain-containing protein | 5.9e-38 | 45.2 | Show/hide |
Query: CVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSELLPFVSTDPSFASCNLPS---PSFTTPTVQHPTPATFEPSPSVENTS
CVFLGY L KGYLC +L K IS HV F E+ FPF +S PSS S PS ++S+ F C PS P + P + TP S S+ + S
Subjt: CVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSELLPFVSTDPSFASCNLPS---PSFTTPTVQHPTPATFEPSPSVENTS
Query: TNVIASSP-TNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKRVF--AAVSKTLPEEPTSFTQASEVPNWQTAMIDEYT
SP +TT +S +P+ PS + PP N HPMQTR KSGISK+++ L EP S+ AS+ P WQ+AM+DEYT
Subjt: TNVIASSP-TNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKRVF--AAVSKTLPEEPTSFTQASEVPNWQTAMIDEYT
Query: TLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
L Q TW L P P + ++GCKWVY+IKR PDGS+ARYK RLVAKGYHQ
Subjt: TLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| A0A2N9FSZ9 Uncharacterized protein | 1.0e-37 | 41.41 | Show/hide |
Query: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLP----SELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSP
P V+CVFLGYP KG+LC+D +F++S HV FDE++FPF SS PS P S ++ST F C++PS P + TP T P
Subjt: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLP----SELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSP
Query: SVENTSTNVIASSPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKR---VFAAVSKTLPEEPTSFTQASEVPNWQTA
V ST S+P S+PT +H P ++ + P N HPMQTR+KSGISKK+ + A L EP SF A +P W A
Subjt: SVENTSTNVIASSPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKR---VFAAVSKTLPEEPTSFTQASEVPNWQTA
Query: MIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
M E+ L Q+TW L P P + +IGC WV+++KR+ DGS+ARYK RLVA+G HQ
Subjt: MIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| A0A2N9GRJ0 Uncharacterized protein | 5.9e-38 | 45.2 | Show/hide |
Query: CVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSELLPFVSTDPSFASCNLPS---PSFTTPTVQHPTPATFEPSPSVENTS
CVFLGY L KGYLC +L K IS HV F E+ FPF +S PSS S PS ++S+ F C PS P + P + TP S S+ + S
Subjt: CVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSELLPFVSTDPSFASCNLPS---PSFTTPTVQHPTPATFEPSPSVENTS
Query: TNVIASSP-TNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKRVF--AAVSKTLPEEPTSFTQASEVPNWQTAMIDEYT
SP +TT +S +P+ PS + PP N HPMQTR KSGISK+++ L EP S+ AS+ P WQ+AM+DEYT
Subjt: TNVIASSP-TNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSVSNHHPMQTRSKSGISKKRVF--AAVSKTLPEEPTSFTQASEVPNWQTAMIDEYT
Query: TLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
L Q TW L P P + ++GCKWVY+IKR PDGS+ARYK RLVAKGYHQ
Subjt: TLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| A0A2N9HKM9 Uncharacterized protein | 5.4e-39 | 41.79 | Show/hide |
Query: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSELL----PFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSP
P V+C+FLGYP KG+LC+D +F++S HV FDES+FPF SS PS + LP+ ++S F SC+LPS PT +T P P
Subjt: PSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSELL----PFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSP
Query: SVENTSTNVIAS---SPTNTTP-ETSLSHSLPTDIHEPSPSLEPPEINGT-------DHPSVSNHHPMQTRSKSGISKKRVFAAVSKTLPE----EPTSF
+ TS V++S P++T P TS + +PT P PS + + P V+N HPMQTR KSGI+KK+ ++K+ P+ EP SF
Subjt: SVENTSTNVIAS---SPTNTTP-ETSLSHSLPTDIHEPSPSLEPPEINGT-------DHPSVSNHHPMQTRSKSGISKKRVFAAVSKTLPE----EPTSF
Query: TQASEVPNWQTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
+ A +P W AM E+ L Q+TW L P P +IGC WV+++KR+ DGS+ARYK RLVAKG HQ
Subjt: TQASEVPNWQTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| A0A540LQZ0 Integrase catalytic domain-containing protein | 9.1e-39 | 42.08 | Show/hide |
Query: NPSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFP--FALPSS----PPSSTSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFE
+P C+FLGY YKGY+CY +S K +S HVLFDES+FP + L SS SS S+P L P P+ P + P P
Subjt: NPSWVECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFP--FALPSS----PPSSTSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFE
Query: PSPSVENTSTNVIAS-SPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSV--SNHHPMQTRSKSGISKKRVFAAVSKTLPEEPTSFTQASEVPNW
PSV + + P + + SL + E P + ++ H SV SN HPMQTRSKSGI KK+VF+AV +EP SF+ A+ W
Subjt: PSPSVENTSTNVIAS-SPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPSV--SNHHPMQTRSKSGISKKRVFAAVSKTLPEEPTSFTQASEVPNW
Query: QTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
+ AM +E LI Q+TW L PLP HK ++GCKW+Y++KR+PDGS+ARYK RLVAKG+ Q
Subjt: QTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 8.3e-05 | 26.9 | Show/hide |
Query: PTDIHEPSPSLEPPEINGTDHPS------VSNHHPMQTRSKSGISKKRVFAAVSKTLPEEPTSFTQASEVPN-------------WQTAMIDEYTTLINQ
P + E + EI G D+P+ + N + ++K IS +++K + T F ++VPN W+ A+ E
Subjt: PTDIHEPSPSLEPPEINGTDHPS------VSNHHPMQTRSKSGISKKRVFAAVSKTLPEEPTSFTQASEVPN-------------WQTAMIDEYTTLINQ
Query: NTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
NTW +T P +K ++ +WV+ +K + G+ RYK RLVA+G+ Q
Subjt: NTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.0e-07 | 24.9 | Show/hide |
Query: VECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSPSVENTST
+ C+F+GY GY +D KK S V+F ES + ++ S + + ++P T PS T +PT
Subjt: VECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFALPSSPPSSTSLPSELLPFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSPSVENTST
Query: NVIASSPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPS--VSNHHPMQTRSKSGISKKRVFAAVSKTLPE--EPTSFTQASEVP---NWQTAMID
S +TT E S P ++ E L+ + +HP+ H P++ + + +R + + + EP S + P AM +
Subjt: NVIASSPTNTTPETSLSHSLPTDIHEPSPSLEPPEINGTDHPS--VSNHHPMQTRSKSGISKKRVFAAVSKTLPE--EPTSFTQASEVP---NWQTAMID
Query: EYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
E +L T++L LP K+ + CKWV+++K+ D + RYK RLV KG+ Q
Subjt: EYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 1.6e-16 | 43.43 | Show/hide |
Query: MQTRSKSGISK--KRVFAAVSKTLPEEPTSFTQASEVPNWQTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
M TRSK+GI+K + ++ T+ +EP S A + P W AM +E L TW L P P ++ ++GCKWV++ K H DG++ R K RLVAKG+HQ
Subjt: MQTRSKSGISK--KRVFAAVSKTLPEEPTSFTQASEVPNWQTAMIDEYTTLINQNTWELTPLPPHKQVIGCKWVYRIKRHPDGSIARYKVRLVAKGYHQ
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.0e-26 | 32.81 | Show/hide |
Query: ECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFA--------------------------------LP----------SSPPSSTSLP--SELL
+CVFLGY L YLC L + YIS HV FDE+ FPF+ LP ++PPSS S P + +
Subjt: ECVFLGYPLGYKGYLCYDLSIKKFYISCHVLFDESLFPFA--------------------------------LP----------SSPPSSTSLP--SELL
Query: PFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSPSVENT--STNVIASSPTNTTPE---TSLSHSLPTDIHEPSPS----------------LEPP--
+ D SF+S SP T P P P T +P+ + T S N ++PTN +P SLS + PSP+ + PP
Subjt: PFVSTDPSFASCNLPSPSFTTPTVQHPTPATFEPSPSVENT--STNVIASSPTNTTPE---TSLSHSLPTDIHEPSPS----------------LEPP--
Query: --EINGTDHPSVSNHHPMQTRSKSGISK--KRVFAAVSKTLPEEPTSFTQASEVPNWQTAMIDEYTTLINQNTWELTPLPP-HKQVIGCKWVYRIKRHPD
+I ++ + N H M TR+K+GI K + AVS EP + QA + W+ AM E I +TW+L P PP H ++GC+W++ K + D
Subjt: --EINGTDHPSVSNHHPMQTRSKSGISK--KRVFAAVSKTLPEEPTSFTQASEVPNWQTAMIDEYTTLINQNTWELTPLPP-HKQVIGCKWVYRIKRHPD
Query: GSIARYKVRLVAKGYHQ
GS+ RYK RLVAKGY+Q
Subjt: GSIARYKVRLVAKGYHQ
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.2e-16 | 33.77 | Show/hide |
Query: PFALPSSPPSSTSLPSELLPF-VSTDPSFASCNLPSP----------SFTTPTVQHPTPATFEP-SPSVENTSTNVIASSPTNTTPETSLSH-SLPTDIH
P L ++ SS++LPS + S++P+ S N P P + +P + +P P + P SP+ + SSP TP TS+S + P+
Subjt: PFALPSSPPSSTSLPSELLPF-VSTDPSFASCNLPSP----------SFTTPTVQHPTPATFEP-SPSVENTSTNVIASSPTNTTPETSLSH-SLPTDIH
Query: EPSPSLEP----PEINGTDHPSVSNHHPMQTRSKSGISK--KRVFAAVSKTLPEEPTSFTQASEVPNWQTAMIDEYTTLINQNTWELTPLPPHK-QVIGC
+P L P P I + + N H M TR+K GI K ++ A S EP + QA + W+ AM E I +TW+L P PP ++GC
Subjt: EPSPSLEP----PEINGTDHPSVSNHHPMQTRSKSGISK--KRVFAAVSKTLPEEPTSFTQASEVPNWQTAMIDEYTTLINQNTWELTPLPPHK-QVIGC
Query: KWVYRIKRHPDGSIARYKVRLVAKGYHQ
+W++ K + DGS+ RYK RLVAKGY+Q
Subjt: KWVYRIKRHPDGSIARYKVRLVAKGYHQ
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