; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028670 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028670
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S24
Genome locationchr8:27982516..27985335
RNA-Seq ExpressionLag0028670
SyntenyLag0028670
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH10287.1 Ribosomal protein S24e family protein [Prunus dulcis]3.3e-2757.14Show/hide
Query:  SSSLLQPSAVGALFPLVFNPRRRTDLNDYARSSPAATGRRPKASDSHAFRLKASRRRLDN-------MIIDVLHPGRPNVSKAELKEKLARIYDVKDANA
        S+ LL  SA+ +    + NP+     + Y +S       R  A DS A  ++ +R+ + N        +IDVLHPGRPNVSKAELKEKLAR+Y+VKD NA
Subjt:  SSSLLQPSAVGALFPLVFNPRRRTDLNDYARSSPAATGRRPKASDSHAFRLKASRRRLDN-------MIIDVLHPGRPNVSKAELKEKLARIYDVKDANA

Query:  IFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        IFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

KAG6588329.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2796.92Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

XP_004142519.1 40S ribosomal protein S24-1 [Cucumis sativus]1.9e-2796.92Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

XP_008462725.1 PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]1.5e-2798.46Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

XP_022933090.1 40S ribosomal protein S24-1-like [Cucurbita moschata]1.9e-2796.92Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

TrEMBL top hitse value%identityAlignment
A0A0A0LYE3 40S ribosomal protein S249.4e-2896.92Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

A0A1S3CHL4 40S ribosomal protein S247.2e-2898.46Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

A0A5D3E1B6 40S ribosomal protein S247.2e-2898.46Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

A0A6J1F3Y6 40S ribosomal protein S249.4e-2896.92Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

A0A6J1I401 40S ribosomal protein S249.4e-2896.92Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV KFRTHFGGGKSTGFGLIYDSVENAKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

SwissProt top hitse value%identityAlignment
Q56JU9 40S ribosomal protein S247.2e-1762.12Show/hide
Query:  MIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        M+IDVLHPG+  V K E++EKLA++Y     + IFV  FRTHFGGGK+TGFG+IYDS++ AKK EP
Subjt:  MIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

Q75K27 40S ribosomal protein S247.2e-1758.46Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +++V+HPG+ NVSK +LK  +A+++ V D   IF+  F+T FGGGKSTGFGLIYD++E AKKYEP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

Q8LC83 40S ribosomal protein S24-28.5e-2683.08Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF  KFRTHFGGGKS+G+GLIYD+VENAKK+EP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

Q962Q6 40S ribosomal protein S245.5e-1760.61Show/hide
Query:  MIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        M+ DVLHPG+P VSK E++EKLA++Y V   + +FV  F+T+FGGGKSTGF LIYD+++ AKK+EP
Subjt:  MIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

Q9SS17 40S ribosomal protein S24-13.8e-2684.62Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFV KFRTHFGGGKS+GFGLIYD+VE+AKK+EP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein2.7e-2784.62Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFV KFRTHFGGGKS+GFGLIYD+VE+AKK+EP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP

AT5G28060.1 Ribosomal protein S24e family protein6.0e-2783.08Show/hide
Query:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP
        +IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF  KFRTHFGGGKS+G+GLIYD+VENAKK+EP
Subjt:  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGACAAAACTATTTGTCATTCCCAACATCGGCCACTACTTCCTTCATCCTCCGTTCTTCAACCGTCGGCCGCCCCACTTAGTTCTTCCCTTCTTCAACCTTCGGC
CGTCGGAGCTCTCTTTCCCCTTGTCTTCAACCCACGAAGGCGAACAGACCTCAACGACTACGCAAGATCTTCACCGGCGGCGACTGGACGGCGACCAAAAGCATCTGACT
CGCATGCGTTTCGACTGAAGGCGTCTAGACGGCGACTGGACAACATGATCATTGATGTTCTTCACCCAGGAAGACCGAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTA
GCTAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTATTGAAGTTCCGAACTCACTTTGGAGGTGGAAAATCTACTGGTTTCGGTTTGATTTATGATTCAGTTGA
AAATGCCAAAAAATATGAGCCCAACATGCATGTTAAAATGTGGGCTGGGGAGCAGTTTAGGACACAATTGGGTCTTTTGGAGGACATGTTGTGCATAGTGAATGAATTTC
TCTTTTTTGAACAAGATGGCAATGGCGGTTATAGTTTGGCCTTACAAGCAATTTTGGACCACCCCGATGTACGAGGAGCTGACGAGGACAACCGGGGAGAAATCAGGCCG
AGATACGAGCCAAGGAGGTGGAGCCGGCATGCGGGACGGGCCAAGGCCGAAGGGGTCGGGTTCTTGGCCCGACCCCCTGCATGGGCCGAGGCCGACCCTCGGCCCACTCG
CGCGTGCCGAGCCCGTTCGGTCTCGTCTGGTCCACACCGCCTCGGGCTACCCCGGTTTCGCCTGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGACAAAACTATTTGTCATTCCCAACATCGGCCACTACTTCCTTCATCCTCCGTTCTTCAACCGTCGGCCGCCCCACTTAGTTCTTCCCTTCTTCAACCTTCGGC
CGTCGGAGCTCTCTTTCCCCTTGTCTTCAACCCACGAAGGCGAACAGACCTCAACGACTACGCAAGATCTTCACCGGCGGCGACTGGACGGCGACCAAAAGCATCTGACT
CGCATGCGTTTCGACTGAAGGCGTCTAGACGGCGACTGGACAACATGATCATTGATGTTCTTCACCCAGGAAGACCGAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTA
GCTAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTATTGAAGTTCCGAACTCACTTTGGAGGTGGAAAATCTACTGGTTTCGGTTTGATTTATGATTCAGTTGA
AAATGCCAAAAAATATGAGCCCAACATGCATGTTAAAATGTGGGCTGGGGAGCAGTTTAGGACACAATTGGGTCTTTTGGAGGACATGTTGTGCATAGTGAATGAATTTC
TCTTTTTTGAACAAGATGGCAATGGCGGTTATAGTTTGGCCTTACAAGCAATTTTGGACCACCCCGATGTACGAGGAGCTGACGAGGACAACCGGGGAGAAATCAGGCCG
AGATACGAGCCAAGGAGGTGGAGCCGGCATGCGGGACGGGCCAAGGCCGAAGGGGTCGGGTTCTTGGCCCGACCCCCTGCATGGGCCGAGGCCGACCCTCGGCCCACTCG
CGCGTGCCGAGCCCGTTCGGTCTCGTCTGGTCCACACCGCCTCGGGCTACCCCGGTTTCGCCTGGTTTGA
Protein sequenceShow/hide protein sequence
MWDKTICHSQHRPLLPSSSVLQPSAAPLSSSLLQPSAVGALFPLVFNPRRRTDLNDYARSSPAATGRRPKASDSHAFRLKASRRRLDNMIIDVLHPGRPNVSKAELKEKL
ARIYDVKDANAIFVLKFRTHFGGGKSTGFGLIYDSVENAKKYEPNMHVKMWAGEQFRTQLGLLEDMLCIVNEFLFFEQDGNGGYSLALQAILDHPDVRGADEDNRGEIRP
RYEPRRWSRHAGRAKAEGVGFLARPPAWAEADPRPTRACRARSVSSGPHRLGLPRFRLV