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Lag0028683 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028683
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr8:28244493..28244948
RNA-Seq ExpressionLag0028683
SyntenyLag0028683
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]2.5e-3755.97Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L+  N+  WK+ +NT+L+++DLRF+L E+CP +P     Q V++ YERW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD
        MFG  SYQ+ HD LK I+NA+M EG SVREHVL+
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-3959.4Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        MSSSII+LLK +QL+ EN+  WKS LN ILV+ DLRF+L E+CPP P +  +Q+VKDAY+ WTKAN+K  +Y+L SLS++L+K++E + TAR+IM+SL+E
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVL
        MFG PS Q+  + +K ++NA+M EGQSVREHVL
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVL

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-3959.4Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        MSSSII+LLK +QL+ EN+  WKS LN ILV+ DLRF+L E+CPP P +  +Q+VKDAY+ WTKAN+K  +Y+L SLS++L+K++E + TAR+IM+SL+E
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVL
        MFG PS Q+  + +K ++NA+M EGQSVREHVL
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVL

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]2.3e-3858.21Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        MS+S I LL +++L+ +N+  WKSNLNTILV++DLRF+LTE+CPP P     + V+DAY+RW KANEK +VYIL S+SEVL+K++E + T REIM+SLQ 
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD
        +FG PS  L+HD +K ++N +M EG SVREHVL+
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]3.0e-3857.46Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+SSII LL +E+L+ +N+  WKSNLNTILVV+DLRF+LTE+CP  P     + V++AY+RW KANEK ++YIL S+S+VLAK++E++ TA+EI++SL+E
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD
        +FG PS+ L H+ +K+I+  +M EG SVREHVLD
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD

TrEMBL top hitse value%identityAlignment
A0A5A7V6N0 Gag/pol protein1.2e-3755.97Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L+  N+  WK+ +NT+L+++DLRF+L E+CP +P     Q V++ YERW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD
        MFG  SYQ+ HD LK I+NA+M EG SVREHVL+
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD

A0A5A7VA67 Gag/pol protein2.9e-3959.4Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        MSSSII+LLK +QL+ EN+  WKS LN ILV+ DLRF+L E+CPP P +  +Q+VKDAY+ WTKAN+K  +Y+L SLS++L+K++E + TAR+IM+SL+E
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVL
        MFG PS Q+  + +K ++NA+M EGQSVREHVL
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVL

A0A5A7VH46 Gag/pol protein1.2e-3755.97Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        M+S+ +++L  ++L+  N+  WK+ +NT+L+++DLRF+L E+CP +P     + V++ YERW KANEK + YIL SLSEVLAK++E+V TAREIM+SLQE
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD
        MFG  SYQ+ HD LK I+NA+M EG SVREHVL+
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD

A0A5D3D0D9 Gag/pol protein2.9e-3959.4Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        MSSSII+LLK +QL+ EN+  WKS LN ILV+ DLRF+L E+CPP P +  +Q+VKDAY+ WTKAN+K  +Y+L SLS++L+K++E + TAR+IM+SL+E
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVL
        MFG PS Q+  + +K ++NA+M EGQSVREHVL
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVL

A0A6J1DWG6 uncharacterized protein LOC1110250211.1e-3858.21Show/hide
Query:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE
        MS+S I LL +++L+ +N+  WKSNLNTILV++DLRF+LTE+CPP P     + V+DAY+RW KANEK +VYIL S+SEVL+K++E + T REIM+SLQ 
Subjt:  MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQE

Query:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD
        +FG PS  L+HD +K ++N +M EG SVREHVL+
Subjt:  MFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCTATTATTTCCCTGCTTAAAAATGAACAACTTTCCAGCGAAAACTTTCCACAATGGAAATCGAATCTTAATACAATACTCGTGGTTGAGGACTTAAGGTT
CATCTTAACGGAGCAATGTCCTCCCATTCCCCCTCGCACTACCGCTCAGGCAGTAAAAGATGCCTACGAACGCTGGACTAAGGCCAATGAAAAGGTCAAAGTCTATATAC
TGGTCAGCTTGTCTGAAGTATTGGCCAAGCGTTACGAGAACGTGGAAACAGCCAGGGAGATTATGAATTCCCTGCAGGAGATGTTTGGACTTCCGTCCTACCAGCTCCTC
CACGACACCCTGAAGAACATCTTCAATGCCAAGATGCTGGAAGGTCAATCTGTTCGGGAACATGTCCTGGACTACTGCAGGGATAAAAGCCCTAGCGCAGCGGAAACATT
CAGAATACCACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCTATTATTTCCCTGCTTAAAAATGAACAACTTTCCAGCGAAAACTTTCCACAATGGAAATCGAATCTTAATACAATACTCGTGGTTGAGGACTTAAGGTT
CATCTTAACGGAGCAATGTCCTCCCATTCCCCCTCGCACTACCGCTCAGGCAGTAAAAGATGCCTACGAACGCTGGACTAAGGCCAATGAAAAGGTCAAAGTCTATATAC
TGGTCAGCTTGTCTGAAGTATTGGCCAAGCGTTACGAGAACGTGGAAACAGCCAGGGAGATTATGAATTCCCTGCAGGAGATGTTTGGACTTCCGTCCTACCAGCTCCTC
CACGACACCCTGAAGAACATCTTCAATGCCAAGATGCTGGAAGGTCAATCTGTTCGGGAACATGTCCTGGACTACTGCAGGGATAAAAGCCCTAGCGCAGCGGAAACATT
CAGAATACCACACTGA
Protein sequenceShow/hide protein sequence
MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQEMFGLPSYQLL
HDTLKNIFNAKMLEGQSVREHVLDYCRDKSPSAAETFRIPH