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Lag0028711 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028711
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr8:29054028..29055023
RNA-Seq ExpressionLag0028711
SyntenyLag0028711
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037547.1 uncharacterized protein E6C27_scaffold277G001660 [Cucumis melo var. makuwa]1.6e-5365.08Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTDPADVE WLNMLEKC+DVM+CPEE KVRLATFLLQKEA+ WWKSI ARRSDA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTV--SEVVSSGGSHL
        ERKYT+LS Y DVI+ASESD+C RFE+GLRFEI TPV AIAKW NFSQLVETALRVEQSI EEKSAVE SRG ST+   E VSSGGS L
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTV--SEVVSSGGSHL

KAA0043142.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]3.9e-5265.54Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTDPAD E WLNMLEKC+DVM+CPEE KVRLATFLLQKEA+ WWKSI ARRSDA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS
        ERKYT+LSRYADVI+ SESD+C RFE+GLRFEI TPV AIAKW NFSQLVETALRVEQSI EEKSAVE SRG ST S
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS

KAA0051483.1 uncharacterized protein E6C27_scaffold174G00020 [Cucumis melo var. makuwa]5.0e-5265.54Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTDPAD E WLNMLEKC+DVM+CPEE KVRLATFLLQKEA+ WWKSI ARR DA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS
        ERKYT+LSRYADVIVAS+SD+C RFEKGLRF+I TPV AIAKW NFSQLVETALRVEQSI EEKSAVE SRG ST S
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-5266.67Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTDPADVE WLNMLEKC+DVM+CPEE KVRLATFLLQKEA+ WWKSI ARRSDA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS
        ERKYT+LSRYADVIVASESD+C RFE+GLRFEI TPV AIAKW NFSQLVETALRVEQSI EEKSAVE SRG S  S
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]8.0e-5851.72Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTD AD EVWLNMLEKC+DVMSCP+E KVRLATFLLQKEA+ WWKSI ARR+DA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVSEV---------------------
        ERKYT+LSRY ++IVASESD+C RFE+GLRFEI TPV AIAKW NFSQLVETALRVEQSI+EEKS +E SRG ST S +                     
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVSEV---------------------

Query:  ----------VSSG---------GSHLDVDSQGKSREIFHSKDQRFRGT-RELSPRQLSSRESQQLQKREPVVQGRMELWGDLGRREKST
                  +SSG          S    +S  +SR    S     R T  ELSP QLSSRES+  Q RE VVQ   ELWGD+G REKST
Subjt:  ----------VSSG---------GSHLDVDSQGKSREIFHSKDQRFRGT-RELSPRQLSSRESQQLQKREPVVQGRMELWGDLGRREKST

TrEMBL top hitse value%identityAlignment
A0A5A7T7M1 Retrotrans_gag domain-containing protein7.6e-5465.08Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTDPADVE WLNMLEKC+DVM+CPEE KVRLATFLLQKEA+ WWKSI ARRSDA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTV--SEVVSSGGSHL
        ERKYT+LS Y DVI+ASESD+C RFE+GLRFEI TPV AIAKW NFSQLVETALRVEQSI EEKSAVE SRG ST+   E VSSGGS L
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTV--SEVVSSGGSHL

A0A5A7TIK0 Gag protease polyprotein-like protein1.9e-5265.54Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTDPAD E WLNMLEKC+DVM+CPEE KVRLATFLLQKEA+ WWKSI ARRSDA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS
        ERKYT+LSRYADVI+ SESD+C RFE+GLRFEI TPV AIAKW NFSQLVETALRVEQSI EEKSAVE SRG ST S
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS

A0A5A7U6G1 Retrotrans_gag domain-containing protein2.4e-5265.54Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTDPAD E WLNMLEKC+DVM+CPEE KVRLATFLLQKEA+ WWKSI ARR DA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS
        ERKYT+LSRYADVIVAS+SD+C RFEKGLRF+I TPV AIAKW NFSQLVETALRVEQSI EEKSAVE SRG ST S
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS

A0A5A7V0R0 Reverse transcriptase6.4e-5366.67Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTDPADVE WLNMLEKC+DVM+CPEE KVRLATFLLQKEA+ WWKSI ARRSDA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS
        ERKYT+LSRYADVIVASESD+C RFE+GLRFEI TPV AIAKW NFSQLVETALRVEQSI EEKSAVE SRG S  S
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVS

A0A5D3CU23 Retrotrans_gag domain-containing protein3.9e-5851.72Show/hide
Query:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY
        +FEGSTD AD EVWLNMLEKC+DVMSCP+E KVRLATFLLQKEA+ WWKSI ARR+DA                                      +AEY
Subjt:  MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDA--------------------------------------LAEY

Query:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVSEV---------------------
        ERKYT+LSRY ++IVASESD+C RFE+GLRFEI TPV AIAKW NFSQLVETALRVEQSI+EEKS +E SRG ST S +                     
Subjt:  ERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQLVETALRVEQSIIEEKSAVEPSRGASTVSEV---------------------

Query:  ----------VSSG---------GSHLDVDSQGKSREIFHSKDQRFRGT-RELSPRQLSSRESQQLQKREPVVQGRMELWGDLGRREKST
                  +SSG          S    +S  +SR    S     R T  ELSP QLSSRES+  Q RE VVQ   ELWGD+G REKST
Subjt:  ----------VSSG---------GSHLDVDSQGKSREIFHSKDQRFRGT-RELSPRQLSSRESQQLQKREPVVQGRMELWGDLGRREKST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGGGTTCCACAGATCCGGCTGACGTCGAGGTTTGGTTAAATATGCTTGAGAAATGCTATGATGTGATGAGCTGTCCTGAGGAAGGGAAAGTCAGATTGGCCAC
ATTCCTACTGCAGAAAGAGGCAAAGCGATGGTGGAAATCCATATTTGCCAGGCGTAGTGATGCACTGGCCGAGTACGAGAGAAAGTATACCAAACTTTCACGGTATGCTG
ATGTGATTGTGGCATCTGAGAGTGACAAGTGTCTAAGGTTTGAAAAAGGGTTGCGTTTTGAGATACATACCCCAGTTAAAGCTATTGCTAAGTGGATGAATTTTTCTCAG
TTAGTAGAGACTGCCCTACGTGTGGAGCAGAGTATTATAGAGGAAAAGTCAGCAGTGGAGCCTAGTCGTGGGGCTTCAACAGTTTCCGAGGTCGTGAGCAGTGGAGGTTC
ACACCTGGATGTTGACAGCCAGGGCAAATCAAGAGAGATTTTCCACAGCAAAGACCAGCGGTTCAGAGGGACTAGGGAGTTGAGTCCCAGGCAGTTGAGCAGTCGAGAGT
CTCAACAACTGCAGAAGAGGGAACCTGTTGTGCAAGGCAGAATGGAGTTGTGGGGAGACCTAGGCAGGAGGGAAAAGTCTACGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAGGGTTCCACAGATCCGGCTGACGTCGAGGTTTGGTTAAATATGCTTGAGAAATGCTATGATGTGATGAGCTGTCCTGAGGAAGGGAAAGTCAGATTGGCCAC
ATTCCTACTGCAGAAAGAGGCAAAGCGATGGTGGAAATCCATATTTGCCAGGCGTAGTGATGCACTGGCCGAGTACGAGAGAAAGTATACCAAACTTTCACGGTATGCTG
ATGTGATTGTGGCATCTGAGAGTGACAAGTGTCTAAGGTTTGAAAAAGGGTTGCGTTTTGAGATACATACCCCAGTTAAAGCTATTGCTAAGTGGATGAATTTTTCTCAG
TTAGTAGAGACTGCCCTACGTGTGGAGCAGAGTATTATAGAGGAAAAGTCAGCAGTGGAGCCTAGTCGTGGGGCTTCAACAGTTTCCGAGGTCGTGAGCAGTGGAGGTTC
ACACCTGGATGTTGACAGCCAGGGCAAATCAAGAGAGATTTTCCACAGCAAAGACCAGCGGTTCAGAGGGACTAGGGAGTTGAGTCCCAGGCAGTTGAGCAGTCGAGAGT
CTCAACAACTGCAGAAGAGGGAACCTGTTGTGCAAGGCAGAATGGAGTTGTGGGGAGACCTAGGCAGGAGGGAAAAGTCTACGCGATGA
Protein sequenceShow/hide protein sequence
MFEGSTDPADVEVWLNMLEKCYDVMSCPEEGKVRLATFLLQKEAKRWWKSIFARRSDALAEYERKYTKLSRYADVIVASESDKCLRFEKGLRFEIHTPVKAIAKWMNFSQ
LVETALRVEQSIIEEKSAVEPSRGASTVSEVVSSGGSHLDVDSQGKSREIFHSKDQRFRGTRELSPRQLSSRESQQLQKREPVVQGRMELWGDLGRREKSTR