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Lag0028718 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028718
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr8:29203210..29204044
RNA-Seq ExpressionLag0028718
SyntenyLag0028718
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL75419.1 hypothetical protein [Colocasia esculenta]1.3e-1431.5Show/hide
Query:  EATRCRAFVPTLTGLARQWFSKIPWKSI--------------------GLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEADKSSP
        +A +CRAF  TL   AR WF  +P  SI                    G +D  L  ++G   P T+AE ++ AQR+ + EE L + + E+  ++DK  P
Subjt:  EATRCRAFVPTLTGLARQWFSKIPWKSI--------------------GLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEADKSSP

Query:  ----------------------------RPMAEADQRQGASRSCRTKSQCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFV
                                     P+  A ++  A        + P+++RSDP R ++NKYC FH DH H T EC QL+D+IE LI+  Y   FV
Subjt:  ----------------------------RPMAEADQRQGASRSCRTKSQCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFV

XP_022147771.1 uncharacterized protein LOC111016626 [Momordica charantia]1.3e-1437.76Show/hide
Query:  GLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEAD-------------KSSPRPMAEADQRQGASR-SCRTKSQCPEKLRSDPDRRN
        GL DE L+  +GE  P T+AE + +A++ I  +ELL++K    E + D             KS  +  + +  R    R   ++  + PEKLR D ++RN
Subjt:  GLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEAD-------------KSSPRPMAEADQRQGASR-SCRTKSQCPEKLRSDPDRRN

Query:  RNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS
        ++KYC FH DH H T  C +L+ +IE LI++GY K+FVG  RS
Subjt:  RNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS

XP_022149377.1 uncharacterized protein LOC111017807 [Momordica charantia]2.1e-1427.34Show/hide
Query:  EATRCRAFVPTLTGLARQWFSKIPWKSI------------------------------------------------------------------GLQDER
        +A +CRAF   LTG AR W+ ++P +SI                                                                  GL DE 
Subjt:  EATRCRAFVPTLTGLARQWFSKIPWKSI------------------------------------------------------------------GLQDER

Query:  LLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--------------QEEREVEA---DKSSPRPMAEADQRQGASRSCRTKS-----------------
        L   +GE  P T+AE + +A++ I  +ELLR+K              QE+R+ ++   DK S    + A+ R+  S   R++                  
Subjt:  LLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--------------QEEREVEA---DKSSPRPMAEADQRQGASRSCRTKS-----------------

Query:  ----------QCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS
                  + PEKLR DP++R+++K C FH DHDH T  C +L+ +IE LI++GY K+FVG  RS
Subjt:  ----------QCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS

XP_022150760.1 uncharacterized protein LOC111018823 [Momordica charantia]1.6e-1431.13Show/hide
Query:  EATRCRAFVPTLTGLARQWF-------------SKIPWKSIGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--QEEREVEADKSSPRPMAE
        +A +CRAF   LTG AR WF             S + +   GL DE L   +G+  P T+AE + +A++ I  +ELLR+K  + ER ++  +S     A+
Subjt:  EATRCRAFVPTLTGLARQWF-------------SKIPWKSIGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--QEEREVEADKSSPRPMAE

Query:  -------------ADQRQGASRSCRTKS---------------------------QCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIRE
                     A+ R+  +   R++                            + PEKLR  P+RRN++KYC FH +HDH T +  +L+ +IE LI++
Subjt:  -------------ADQRQGASRSCRTKS---------------------------QCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIRE

Query:  GYHKEFVGNDRS
         Y K+FVG  R+
Subjt:  GYHKEFVGNDRS

XP_022159079.1 uncharacterized protein LOC111025521 [Momordica charantia]1.5e-1528.69Show/hide
Query:  EATRCRAFVPTLTGLARQWFSKIPWKS-------------------------------------------IGLQDERLLNSIGESHPQTYAEFMTRAQRY
        +A +CRAF   LTG AR W+ ++P +                                             GL DE L   +GE  P T+AE + +A++ 
Subjt:  EATRCRAFVPTLTGLARQWFSKIPWKS-------------------------------------------IGLQDERLLNSIGESHPQTYAEFMTRAQRY

Query:  ISAEELLRSK--QEEREVE---------------ADKSSPRPMAEADQRQGASRSCRTKS---------------------------QCPEKLRSDPDRR
        I  +ELLR+K  + E++++                DK S    ++AD R+  S   R++                            + P+KLR DP++R
Subjt:  ISAEELLRSK--QEEREVE---------------ADKSSPRPMAEADQRQGASRSCRTKS---------------------------QCPEKLRSDPDRR

Query:  NRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS
        N++KYC FH DH H T  C +L+ +IE LI+ GY K+FVG  RS
Subjt:  NRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS

TrEMBL top hitse value%identityAlignment
A0A6J1D3C7 uncharacterized protein LOC1110166266.1e-1537.76Show/hide
Query:  GLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEAD-------------KSSPRPMAEADQRQGASR-SCRTKSQCPEKLRSDPDRRN
        GL DE L+  +GE  P T+AE + +A++ I  +ELL++K    E + D             KS  +  + +  R    R   ++  + PEKLR D ++RN
Subjt:  GLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEAD-------------KSSPRPMAEADQRQGASR-SCRTKSQCPEKLRSDPDRRN

Query:  RNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS
        ++KYC FH DH H T  C +L+ +IE LI++GY K+FVG  RS
Subjt:  RNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS

A0A6J1D7S8 uncharacterized protein LOC1110178071.0e-1427.34Show/hide
Query:  EATRCRAFVPTLTGLARQWFSKIPWKSI------------------------------------------------------------------GLQDER
        +A +CRAF   LTG AR W+ ++P +SI                                                                  GL DE 
Subjt:  EATRCRAFVPTLTGLARQWFSKIPWKSI------------------------------------------------------------------GLQDER

Query:  LLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--------------QEEREVEA---DKSSPRPMAEADQRQGASRSCRTKS-----------------
        L   +GE  P T+AE + +A++ I  +ELLR+K              QE+R+ ++   DK S    + A+ R+  S   R++                  
Subjt:  LLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--------------QEEREVEA---DKSSPRPMAEADQRQGASRSCRTKS-----------------

Query:  ----------QCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS
                  + PEKLR DP++R+++K C FH DHDH T  C +L+ +IE LI++GY K+FVG  RS
Subjt:  ----------QCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS

A0A6J1D9E1 uncharacterized protein LOC1110188238.0e-1531.13Show/hide
Query:  EATRCRAFVPTLTGLARQWF-------------SKIPWKSIGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--QEEREVEADKSSPRPMAE
        +A +CRAF   LTG AR WF             S + +   GL DE L   +G+  P T+AE + +A++ I  +ELLR+K  + ER ++  +S     A+
Subjt:  EATRCRAFVPTLTGLARQWF-------------SKIPWKSIGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--QEEREVEADKSSPRPMAE

Query:  -------------ADQRQGASRSCRTKS---------------------------QCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIRE
                     A+ R+  +   R++                            + PEKLR  P+RRN++KYC FH +HDH T +  +L+ +IE LI++
Subjt:  -------------ADQRQGASRSCRTKS---------------------------QCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIRE

Query:  GYHKEFVGNDRS
         Y K+FVG  R+
Subjt:  GYHKEFVGNDRS

A0A6J1DXR9 uncharacterized protein LOC1110251096.7e-1427.47Show/hide
Query:  EATRCRAFVPTLTGLARQWFSKIPWKS---------------------------------IGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSK
        +A +CRAF   LTG AR W+ ++P +                                   GL DE L   +GE  P T+AE + +A++ I  +ELLR+K
Subjt:  EATRCRAFVPTLTGLARQWFSKIPWKS---------------------------------IGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSK

Query:  --QEEREV-------EADKSSPRPMAEADQRQGASRSCRTKS----------------------------------QCPEKLRSDPDRRNRNKYCMFHGD
          + ER++       + +++ P+   +     G +   R ++                                  +  EKLR  P+RR ++KYC FH +
Subjt:  --QEEREV-------EADKSSPRPMAEADQRQGASRSCRTKS----------------------------------QCPEKLRSDPDRRNRNKYCMFHGD

Query:  HDHTTRECIQLRDKIEALIREGYHKEFVGNDRS
        H H T  C +L+ +IE LI++GY K+FVGN R+
Subjt:  HDHTTRECIQLRDKIEALIREGYHKEFVGNDRS

A0A6J1E1B3 uncharacterized protein LOC1110255217.2e-1628.69Show/hide
Query:  EATRCRAFVPTLTGLARQWFSKIPWKS-------------------------------------------IGLQDERLLNSIGESHPQTYAEFMTRAQRY
        +A +CRAF   LTG AR W+ ++P +                                             GL DE L   +GE  P T+AE + +A++ 
Subjt:  EATRCRAFVPTLTGLARQWFSKIPWKS-------------------------------------------IGLQDERLLNSIGESHPQTYAEFMTRAQRY

Query:  ISAEELLRSK--QEEREVE---------------ADKSSPRPMAEADQRQGASRSCRTKS---------------------------QCPEKLRSDPDRR
        I  +ELLR+K  + E++++                DK S    ++AD R+  S   R++                            + P+KLR DP++R
Subjt:  ISAEELLRSK--QEEREVE---------------ADKSSPRPMAEADQRQGASRSCRTKS---------------------------QCPEKLRSDPDRR

Query:  NRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS
        N++KYC FH DH H T  C +L+ +IE LI+ GY K+FVG  RS
Subjt:  NRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGAAAAAGTCGGAGGCTCGGGCAAAGTCTGAGGCCGAGCAGGGCCAAAAGGGGCAGGAGCTATTCCAAACGGCTAAAAGACGAAGCGACAAGGTGCCGAGCCTT
TGTGCCAACACTCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCATGGAAGTCAATCGGTCTGCAGGATGAAAGACTGCTCAACTCGATCGGTGAGAGCCATCCAC
AGACATACGCCGAATTCATGACCCGAGCACAAAGGTACATAAGCGCCGAGGAACTGCTGAGGTCCAAACAAGAAGAGAGAGAGGTTGAAGCCGACAAGAGCAGTCCTCGG
CCAATGGCCGAGGCCGACCAGAGACAGGGAGCCTCGAGGTCGTGCAGAACCAAAAGCCAGTGCCCAGAAAAATTGAGGTCGGACCCAGACAGGAGGAATCGAAACAAGTA
CTGCATGTTCCACGGAGACCACGATCACACAACTCGAGAATGCATACAGTTGAGGGACAAGATAGAAGCCCTAATCCGAGAGGGTTACCACAAGGAGTTTGTGGGGAATG
ACAGAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGGAAAAAGTCGGAGGCTCGGGCAAAGTCTGAGGCCGAGCAGGGCCAAAAGGGGCAGGAGCTATTCCAAACGGCTAAAAGACGAAGCGACAAGGTGCCGAGCCTT
TGTGCCAACACTCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCATGGAAGTCAATCGGTCTGCAGGATGAAAGACTGCTCAACTCGATCGGTGAGAGCCATCCAC
AGACATACGCCGAATTCATGACCCGAGCACAAAGGTACATAAGCGCCGAGGAACTGCTGAGGTCCAAACAAGAAGAGAGAGAGGTTGAAGCCGACAAGAGCAGTCCTCGG
CCAATGGCCGAGGCCGACCAGAGACAGGGAGCCTCGAGGTCGTGCAGAACCAAAAGCCAGTGCCCAGAAAAATTGAGGTCGGACCCAGACAGGAGGAATCGAAACAAGTA
CTGCATGTTCCACGGAGACCACGATCACACAACTCGAGAATGCATACAGTTGAGGGACAAGATAGAAGCCCTAATCCGAGAGGGTTACCACAAGGAGTTTGTGGGGAATG
ACAGAAGCTAG
Protein sequenceShow/hide protein sequence
MTGKSRRLGQSLRPSRAKRGRSYSKRLKDEATRCRAFVPTLTGLARQWFSKIPWKSIGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEADKSSPR
PMAEADQRQGASRSCRTKSQCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS