; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028750 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028750
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr8:29878680..29880003
RNA-Seq ExpressionLag0028750
SyntenyLag0028750
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN63649.1 hypothetical protein VITISV_037657 [Vitis vinifera]4.8e-2637.97Show/hide
Query:  APNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC---------------EPISYRDHLA
        A +  P+L Q  +V+L+ +N+LLW+ Q+LN ++ANGL   + G I AP++FL D  +  NPE+ +W+R NR +MC               E I+ +D + 
Subjt:  APNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC---------------EPISYRDHLA

Query:  YILDGLGSEYNPFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHI--HNSRRSSSRPPNQTSRSPFNPSSF
        Y+L GL +EYN FV T+ +R +  SLE++HS+LL +E RLE+Q   E+ NL Q N+++++I  HN +   S       R   N   F
Subjt:  YILDGLGSEYNPFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHI--HNSRRSSSRPPNQTSRSPFNPSSF

GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]4.2e-3037.66Show/hide
Query:  PQPP--------SFPNP----IAPNPYPTLP---QPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC
        P PP        S PNP    +  +P P +P   QPL+VKL+D+N+++WK QLLN V+ANGL  FLDGS   P +FLD QQQQ NPEF  W+RYNR +M 
Subjt:  PQPP--------SFPNP----IAPNPYPTLP---QPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC

Query:  --------------------------------------------------------------------------EPISYRDHLAYILDGLGSEYNPFVTT
                                                                                  EP++Y DHL Y L GLG +YNPFVT+
Subjt:  --------------------------------------------------------------------------EPISYRDHLAYILDGLGSEYNPFVTT

Query:  IQNRSDNPSLEDVHSLLLAYEARLEKQTAVE
        IQ+++  PS+E+VHSLLL+Y+ARLE+Q+A +
Subjt:  IQNRSDNPSLEDVHSLLLAYEARLEKQTAVE

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]8.2e-2631.82Show/hide
Query:  NPRLQMSFYPQPPSFPN----------PIAPNP-YPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYN
        NP +QM     P + PN          P+ P P  P++ QP ++KL+ +N+L+WKNQLLN ++ANGL  F+DGS P P +F D  +Q  N E++ W+R+N
Subjt:  NPRLQMSFYPQPPSFPN----------PIAPNP-YPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYN

Query:  RFIMC--------------------------------------------------------------------------EPISYRDHLAYILDGLGSEYN
        R IM                                                                           EP+S +DHL Y+  GL  EYN
Subjt:  RFIMC--------------------------------------------------------------------------EPISYRDHLAYILDGLGSEYN

Query:  PFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHIHNS--RRSSSRPPNQTSRSPFNPS----SFPPFSISSTPTAPISQSVLGR
         FVT+I  R DN  LE+++SLLL+YE RLE Q A  QL+  Q NL+ L+I+    R + S P    +++  N +    S PP S    P      S+LG+
Subjt:  PFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHIHNS--RRSSSRPPNQTSRSPFNPS----SFPPFSISSTPTAPISQSVLGR

Query:  PQSQPLQK
        PQ + + +
Subjt:  PQSQPLQK

RVX04814.1 hypothetical protein CK203_024917 [Vitis vinifera]5.5e-2247.54Show/hide
Query:  PYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMCEPISYRDHLAYILDGLGSEYNPFVTTIQ
        P P+L QPLS+KL++ N LLW NQL+N ++ANGL  F++     P K+LD  ++Q NP+F+ WER N          R+ L  I +GL  +Y+ FVT+I 
Subjt:  PYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMCEPISYRDHLAYILDGLGSEYNPFVTTIQ

Query:  NRSDNPSLEDVHSLLLAYEARL
        NR D PS ++VHSLL  YE+RL
Subjt:  NRSDNPSLEDVHSLLLAYEARL

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]2.5e-5446.15Show/hide
Query:  MSFYPQPPSF----PNPIAPNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC-------
        M F P  P+F    PNP + NP+PTLPQPL+VKLNDNNFLLWKNQLLNAV+ANGL G+LDG+I  P +FLD  Q QPNP +  WERYNR +MC       
Subjt:  MSFYPQPPSF----PNPIAPNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC-------

Query:  -------------------------------------------------------------------EPISYRDHLAYILDGLGSEYNPFVTTIQNRSDN
                                                                           EP+SYRDHLA++LDGLGSEYN FVT+I NR+D+
Subjt:  -------------------------------------------------------------------EPISYRDHLAYILDGLGSEYNPFVTTIQNRSDN

Query:  PSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHI-HNSRRSSSRPPNQTSRSPFNPSSFPPFSISSTPTAPISQSVLGRPQSQPLQKWSSRPPTN
        PSLEDV SLLLAYEARL+KQ  V+QLN+AQ NL +L + HNS+    RPP + S       SFP   IS    A  SQS+LG+PQS  + KW  +P ++
Subjt:  PSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHI-HNSRRSSSRPPNQTSRSPFNPSSFPPFSISSTPTAPISQSVLGRPQSQPLQKWSSRPPTN

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein4.0e-2631.82Show/hide
Query:  NPRLQMSFYPQPPSFPN----------PIAPNP-YPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYN
        NP +QM     P + PN          P+ P P  P++ QP ++KL+ +N+L+WKNQLLN ++ANGL  F+DGS P P +F D  +Q  N E++ W+R+N
Subjt:  NPRLQMSFYPQPPSFPN----------PIAPNP-YPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYN

Query:  RFIMC--------------------------------------------------------------------------EPISYRDHLAYILDGLGSEYN
        R IM                                                                           EP+S +DHL Y+  GL  EYN
Subjt:  RFIMC--------------------------------------------------------------------------EPISYRDHLAYILDGLGSEYN

Query:  PFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHIHNS--RRSSSRPPNQTSRSPFNPS----SFPPFSISSTPTAPISQSVLGR
         FVT+I  R DN  LE+++SLLL+YE RLE Q A  QL+  Q NL+ L+I+    R + S P    +++  N +    S PP S    P      S+LG+
Subjt:  PFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHIHNS--RRSSSRPPNQTSRSPFNPS----SFPPFSISSTPTAPISQSVLGR

Query:  PQSQPLQK
        PQ + + +
Subjt:  PQSQPLQK

A0A438J785 Uncharacterized protein2.7e-2247.54Show/hide
Query:  PYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMCEPISYRDHLAYILDGLGSEYNPFVTTIQ
        P P+L QPLS+KL++ N LLW NQL+N ++ANGL  F++     P K+LD  ++Q NP+F+ WER N          R+ L  I +GL  +Y+ FVT+I 
Subjt:  PYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMCEPISYRDHLAYILDGLGSEYNPFVTTIQ

Query:  NRSDNPSLEDVHSLLLAYEARL
        NR D PS ++VHSLL  YE+RL
Subjt:  NRSDNPSLEDVHSLLLAYEARL

A0A6J1DQX7 uncharacterized protein LOC1110223151.2e-5446.15Show/hide
Query:  MSFYPQPPSF----PNPIAPNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC-------
        M F P  P+F    PNP + NP+PTLPQPL+VKLNDNNFLLWKNQLLNAV+ANGL G+LDG+I  P +FLD  Q QPNP +  WERYNR +MC       
Subjt:  MSFYPQPPSF----PNPIAPNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC-------

Query:  -------------------------------------------------------------------EPISYRDHLAYILDGLGSEYNPFVTTIQNRSDN
                                                                           EP+SYRDHLA++LDGLGSEYN FVT+I NR+D+
Subjt:  -------------------------------------------------------------------EPISYRDHLAYILDGLGSEYNPFVTTIQNRSDN

Query:  PSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHI-HNSRRSSSRPPNQTSRSPFNPSSFPPFSISSTPTAPISQSVLGRPQSQPLQKWSSRPPTN
        PSLEDV SLLLAYEARL+KQ  V+QLN+AQ NL +L + HNS+    RPP + S       SFP   IS    A  SQS+LG+PQS  + KW  +P ++
Subjt:  PSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHI-HNSRRSSSRPPNQTSRSPFNPSSFPPFSISSTPTAPISQSVLGRPQSQPLQKWSSRPPTN

A0A7J0EGI5 Uncharacterized protein2.0e-3037.66Show/hide
Query:  PQPP--------SFPNP----IAPNPYPTLP---QPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC
        P PP        S PNP    +  +P P +P   QPL+VKL+D+N+++WK QLLN V+ANGL  FLDGS   P +FLD QQQQ NPEF  W+RYNR +M 
Subjt:  PQPP--------SFPNP----IAPNPYPTLP---QPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC

Query:  --------------------------------------------------------------------------EPISYRDHLAYILDGLGSEYNPFVTT
                                                                                  EP++Y DHL Y L GLG +YNPFVT+
Subjt:  --------------------------------------------------------------------------EPISYRDHLAYILDGLGSEYNPFVTT

Query:  IQNRSDNPSLEDVHSLLLAYEARLEKQTAVE
        IQ+++  PS+E+VHSLLL+Y+ARLE+Q+A +
Subjt:  IQNRSDNPSLEDVHSLLLAYEARLEKQTAVE

A5BMF5 Uncharacterized protein2.3e-2637.97Show/hide
Query:  APNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC---------------EPISYRDHLA
        A +  P+L Q  +V+L+ +N+LLW+ Q+LN ++ANGL   + G I AP++FL D  +  NPE+ +W+R NR +MC               E I+ +D + 
Subjt:  APNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMC---------------EPISYRDHLA

Query:  YILDGLGSEYNPFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHI--HNSRRSSSRPPNQTSRSPFNPSSF
        Y+L GL +EYN FV T+ +R +  SLE++HS+LL +E RLE+Q   E+ NL Q N+++++I  HN +   S       R   N   F
Subjt:  YILDGLGSEYNPFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHI--HNSRRSSSRPPNQTSRSPFNPSSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACAGGGGAATCATCTTCTTCATCCTCCTTCACTTCTTCGACTACACCAGTGGCCTCTCCAAATATCACTCCAACTGTTACTCCGTGGTTACCCCGATACATCAG
CCTCTGCATCCTTCTACACAATCTCCAAATCGCCCAATTGTTCGGCCTCAACCACCTCTTCCGCAACCTCAGCCACCGATTGCTCCTCAACCTCCTCAAACCCCAACATA
TCAACCCCAAACTTTCGCTCAACCCTTACCAAATTTCGCTCAACCATTTTATCCCGCCCAGTTCACACGCCCTCAATCCTTACCCCATTTTTTCCAACCTCAGAATCACT
ATCAACAACCTTTCGCGCCGGCGTCTTTTCCTCAACCCTCGCCTACAAATGTCCTTTTATCCTCAACCTCCATCTTTTCCTAATCCGATTGCACCCAACCCCTATCCAAC
TCTGCCTCAACCCCTGTCGGTCAAGCTTAATGACAATAACTTTCTCCTTTGGAAAAATCAACTGCTAAACGCTGTTTTGGCAAATGGTTTGAATGGTTTTCTCGATGGCT
CTATCCCAGCTCCCAACAAATTCCTTGACGATCAGCAGCAGCAACCGAATCCAGAGTTTCTTCTTTGGGAAAGGTACAATCGTTTTATCATGTGTGAACCTATATCTTAT
CGGGATCATTTAGCCTACATTTTAGATGGCCTTGGTAGTGAATACAACCCATTTGTCACTACCATTCAAAATCGTTCTGATAATCCCTCTCTTGAGGATGTTCACAGTCT
TCTTTTAGCTTACGAGGCTCGGTTAGAAAAGCAAACTGCAGTTGAACAACTTAATTTGGCCCAAGTGAACCTTAGTAGTCTTCACATCCATAACAGTCGTCGTTCCTCTT
CCCGACCACCTAATCAAACCTCTAGATCTCCCTTCAATCCATCTTCCTTTCCTCCATTTTCTATTTCATCTACTCCAACAGCCCCTATTTCTCAAAGTGTTTTAGGAAGA
CCTCAATCTCAGCCTCTACAAAAATGGTCATCTCGGCCCCCAACAAACCTCAATGCCAAATTTGTGGTAAATTTGGCCACACTGCCCTCATTTGTCACCATAGGACAAAT
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGACAGGGGAATCATCTTCTTCATCCTCCTTCACTTCTTCGACTACACCAGTGGCCTCTCCAAATATCACTCCAACTGTTACTCCGTGGTTACCCCGATACATCAG
CCTCTGCATCCTTCTACACAATCTCCAAATCGCCCAATTGTTCGGCCTCAACCACCTCTTCCGCAACCTCAGCCACCGATTGCTCCTCAACCTCCTCAAACCCCAACATA
TCAACCCCAAACTTTCGCTCAACCCTTACCAAATTTCGCTCAACCATTTTATCCCGCCCAGTTCACACGCCCTCAATCCTTACCCCATTTTTTCCAACCTCAGAATCACT
ATCAACAACCTTTCGCGCCGGCGTCTTTTCCTCAACCCTCGCCTACAAATGTCCTTTTATCCTCAACCTCCATCTTTTCCTAATCCGATTGCACCCAACCCCTATCCAAC
TCTGCCTCAACCCCTGTCGGTCAAGCTTAATGACAATAACTTTCTCCTTTGGAAAAATCAACTGCTAAACGCTGTTTTGGCAAATGGTTTGAATGGTTTTCTCGATGGCT
CTATCCCAGCTCCCAACAAATTCCTTGACGATCAGCAGCAGCAACCGAATCCAGAGTTTCTTCTTTGGGAAAGGTACAATCGTTTTATCATGTGTGAACCTATATCTTAT
CGGGATCATTTAGCCTACATTTTAGATGGCCTTGGTAGTGAATACAACCCATTTGTCACTACCATTCAAAATCGTTCTGATAATCCCTCTCTTGAGGATGTTCACAGTCT
TCTTTTAGCTTACGAGGCTCGGTTAGAAAAGCAAACTGCAGTTGAACAACTTAATTTGGCCCAAGTGAACCTTAGTAGTCTTCACATCCATAACAGTCGTCGTTCCTCTT
CCCGACCACCTAATCAAACCTCTAGATCTCCCTTCAATCCATCTTCCTTTCCTCCATTTTCTATTTCATCTACTCCAACAGCCCCTATTTCTCAAAGTGTTTTAGGAAGA
CCTCAATCTCAGCCTCTACAAAAATGGTCATCTCGGCCCCCAACAAACCTCAATGCCAAATTTGTGGTAAATTTGGCCACACTGCCCTCATTTGTCACCATAGGACAAAT
CTAG
Protein sequenceShow/hide protein sequence
MTTGESSSSSSFTSSTTPVASPNITPTVTPWLPRYISLCILLHNLQIAQLFGLNHLFRNLSHRLLLNLLKPQHINPKLSLNPYQISLNHFIPPSSHALNPYPIFSNLRIT
INNLSRRRLFLNPRLQMSFYPQPPSFPNPIAPNPYPTLPQPLSVKLNDNNFLLWKNQLLNAVLANGLNGFLDGSIPAPNKFLDDQQQQPNPEFLLWERYNRFIMCEPISY
RDHLAYILDGLGSEYNPFVTTIQNRSDNPSLEDVHSLLLAYEARLEKQTAVEQLNLAQVNLSSLHIHNSRRSSSRPPNQTSRSPFNPSSFPPFSISSTPTAPISQSVLGR
PQSQPLQKWSSRPPTNLNAKFVVNLATLPSFVTIGQI