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Lag0028762 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028762
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:30198051..30198557
RNA-Seq ExpressionLag0028762
SyntenyLag0028762
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]2.4e-4955.15Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL
        FRDLE FNQALLAKQCWRI++ P S ++R+ R RY PS  FL+A VG+ PS+IWRSL WG+ELL KG+ WR+ +G  + VY   W+P  +C K+ SP  L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL

Query:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L TRV +L + SGQWN  LL+  F  +EV +IL IPL  ++  D +IWH+E+ G+Y+VKSGYRL
Subjt:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]1.2e-4854.55Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL
        FRDLE FNQALLAKQCWRI++ P S ++R+ R RY PS  FL+A VG+ PS+IW SL WG+ELL KG+ WR+ +G  + VY   W+P  +C K+ SP  L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL

Query:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L TRV +L + SGQWN  LL+  F  +EV +IL IPL  ++  D +IWH+E+ G+Y+VKSGYRL
Subjt:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]5.1e-4753.94Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL
        FRDLE FNQALLAKQCWRI++ P S ++R+ R RY PS  FL+A VG+ PS+IWRSL WG+ELL KG+ WR+ NG  + VY   W+P  +  K+ SP  L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL

Query:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L T V +L + SGQWN  LL+  F  +EV + L IPL  ++  D +IWH+E+ G+Y+VKSGYRL
Subjt:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.0e-4751.79Show/hide
Query:  MCFRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPV
        M FRDLE FN+ALLAKQCWRI+ HP S LSRVL+ RYF    F++A +   PSYIWRS++WGR+LL KG+ WRI NG+ V +YG NW+P+   LK+ S  
Subjt:  MCFRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPV

Query:  TLDLDTRVANLLS-VSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L L +RV++L+    G W  +++R  F+P E + IL+IP+   + ED++IW++EK GVY+V+SGY++
Subjt:  TLDLDTRVANLLS-VSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]1.3e-4751.5Show/hide
Query:  MCFRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPV
        M FRDL +FNQAL+AKQ WRI+Q P+S ++RVL+ RYF    F++AG+GS+PS++WRS++WGR++L KG  WRI NG+ V VYG+NWIP  T  K  S  
Subjt:  MCFRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPV

Query:  TLDLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
        ++  DT VA L+    QW E+L+  HF P +  +I+ IPL     ED++IWH++K G Y+VKSGY++
Subjt:  TLDLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

TrEMBL top hitse value%identityAlignment
A0A251NPF0 Reverse transcriptase domain-containing protein1.2e-4955.15Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL
        FRDLE FNQALLAKQCWRI++ P S ++R+ R RY PS  FL+A VG+ PS+IWRSL WG+ELL KG+ WR+ +G  + VY   W+P  +C K+ SP  L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL

Query:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L TRV +L + SGQWN  LL+  F  +EV +IL IPL  ++  D +IWH+E+ G+Y+VKSGYRL
Subjt:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

A0A5E4FZN9 PREDICTED: retrotransposon2.4e-4753.94Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL
        FRDLE FNQALLAKQCWRI++ P S ++R+ R RY PS  FL+A VG+ PS+IWRSL WG+ELL KG+ WR+ NG  + VY   W+P  +  K+ SP  L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL

Query:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L T V +L + SGQWN  LL+  F  +EV + L IPL  ++  D +IWH+E+ G+Y+VKSGYRL
Subjt:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

A0A6J1DAR4 uncharacterized protein LOC1110189544.9e-4851.79Show/hide
Query:  MCFRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPV
        M FRDLE FN+ALLAKQCWRI+ HP S LSRVL+ RYF    F++A +   PSYIWRS++WGR+LL KG+ WRI NG+ V +YG NW+P+   LK+ S  
Subjt:  MCFRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPV

Query:  TLDLDTRVANLLS-VSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L L +RV++L+    G W  +++R  F+P E + IL+IP+   + ED++IW++EK GVY+V+SGY++
Subjt:  TLDLDTRVANLLS-VSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)1.2e-4955.15Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL
        FRDLE FNQALLAKQCWRI++ P S ++R+ R RY PS  FL+A VG+ PS+IWRSL WG+ELL KG+ WR+ +G  + VY   W+P  +C K+ SP  L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL

Query:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L TRV +L + SGQWN  LL+  F  +EV +IL IPL  ++  D +IWH+E+ G+Y+VKSGYRL
Subjt:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

M5WJW2 Reverse transcriptase domain-containing protein5.8e-4954.55Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL
        FRDLE FNQALLAKQCWRI++ P S ++R+ R RY PS  FL+A VG+ PS+IW SL WG+ELL KG+ WR+ +G  + VY   W+P  +C K+ SP  L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTL

Query:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         L TRV +L + SGQWN  LL+  F  +EV +IL IPL  ++  D +IWH+E+ G+Y+VKSGYRL
Subjt:  DLDTRVANLLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003101.0e-2153.26Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCL
        FRDL  FNQALLAKQ +RI+  P + LSR+LR RYFP    ++  VG+RPSY WRS+I GRELL +G+   I +G    V+   WI D+T L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCL

Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein6.2e-1128.99Show/hide
Query:  LRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTLDLDTRVANLLSVSGQ---WNEELLRHHFSP
        ++ RYF     LDA V  + SY W SL+ G  LL KG    I +G+ + +   N +       + +  T   +  + NL    G    W++  +      
Subjt:  LRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTLDLDTRVANLLSVSGQ---WNEELLRHHFSP

Query:  REVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL
         +   I  I L      DK+IW++   G YTV+SGY L
Subjt:  REVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRL

AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-2333.14Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWI---PDDTCLKV-RS
        F+D+E FN ALL KQ WR++  P S +++V + RYF   D L+A +GSRPS++W+S+   +E+L +G    + NGE + ++   W+   P    L++ R 
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWI---PDDTCLKV-RS

Query:  P----VTLDLDTRVANLLSVSG-QWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGY
        P     ++    +V++L+  SG +W ++++   F   E + I  +        D   W +   G YTVKSGY
Subjt:  P----VTLDLDTRVANLLSVSG-QWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGY

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.1e-2353.26Show/hide
Query:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCL
        FRDL  FNQALLAKQ +RI+  P + LSR+LR RYFP    ++  VG+RPSY WRS+I GRELL +G+   I +G    V+   WI D+T L
Subjt:  FRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTCAGAGACCTGGAAACTTTCAACCAAGCTCTCCTGGCCAAACAGTGTTGGAGGATTGTTCAGCATCCTACCTCGTTTCTCTCCCGTGTGTTGAGGGAGCGGTA
TTTTCCTAGTGGAGACTTCCTGGATGCAGGGGTAGGCTCCCGCCCCTCGTATATTTGGAGGAGTCTAATTTGGGGGAGGGAGCTTTTGGGTAAGGGTATTCACTGGAGGA
TTGAGAATGGGGAGAGAGTCAGTGTATATGGATCTAACTGGATTCCGGACGATACCTGCCTTAAGGTACGGTCCCCGGTTACTTTGGATCTGGATACTCGAGTGGCTAAT
CTTCTTTCTGTCTCGGGCCAGTGGAATGAGGAACTCCTTCGGCATCACTTTAGTCCTCGCGAGGTACGCTCTATCCTTACTATCCCTTTGCGGCATATATCATCTGAGGA
TAAGGTCATATGGCATTTTGAGAAGTGTGGGGTCTATACGGTTAAGAGTGGGTACCGGCTTGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTTCAGAGACCTGGAAACTTTCAACCAAGCTCTCCTGGCCAAACAGTGTTGGAGGATTGTTCAGCATCCTACCTCGTTTCTCTCCCGTGTGTTGAGGGAGCGGTA
TTTTCCTAGTGGAGACTTCCTGGATGCAGGGGTAGGCTCCCGCCCCTCGTATATTTGGAGGAGTCTAATTTGGGGGAGGGAGCTTTTGGGTAAGGGTATTCACTGGAGGA
TTGAGAATGGGGAGAGAGTCAGTGTATATGGATCTAACTGGATTCCGGACGATACCTGCCTTAAGGTACGGTCCCCGGTTACTTTGGATCTGGATACTCGAGTGGCTAAT
CTTCTTTCTGTCTCGGGCCAGTGGAATGAGGAACTCCTTCGGCATCACTTTAGTCCTCGCGAGGTACGCTCTATCCTTACTATCCCTTTGCGGCATATATCATCTGAGGA
TAAGGTCATATGGCATTTTGAGAAGTGTGGGGTCTATACGGTTAAGAGTGGGTACCGGCTTGGCTAG
Protein sequenceShow/hide protein sequence
MCFRDLETFNQALLAKQCWRIVQHPTSFLSRVLRERYFPSGDFLDAGVGSRPSYIWRSLIWGRELLGKGIHWRIENGERVSVYGSNWIPDDTCLKVRSPVTLDLDTRVAN
LLSVSGQWNEELLRHHFSPREVRSILTIPLRHISSEDKVIWHFEKCGVYTVKSGYRLG