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Lag0028763 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028763
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr8:30209806..30219142
RNA-Seq ExpressionLag0028763
SyntenyLag0028763
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]3.4e-0568.42Show/hide
Query:  GESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
        GES    DSI L F GQDR+GSWEHN TRWN LLP  R
Subjt:  GESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-0461.54Show/hide
Query:  SDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSR
        SD     + L  WGQD+VGSWEHN  RWNSL+PD R SR
Subjt:  SDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]6.9e-0672.97Show/hide
Query:  ESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
        ES   ADS+ L FWGQDRV SWEHN TRWNSLLP  R
Subjt:  ESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-0671.05Show/hide
Query:  GESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
        GES    DSI L FWGQDRVGSWEHN TRWNS +P  R
Subjt:  GESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]1.7e-0461.54Show/hide
Query:  SDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSR
        SD     + L  WGQD+VGSWEHN  RWNSL+PD R SR
Subjt:  SDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein8.3e-0561.54Show/hide
Query:  SDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSR
        SD     + L  WGQD+VGSWEHN  RWNSL+PD R SR
Subjt:  SDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSR
A0A5A7SPG1 Pol protein1.7e-0568.42Show/hide
Query:  GESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
        GES    DSI L F GQDR+GSWEHN TRWN LLP  R
Subjt:  GESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
A0A5A7U2P4 Integrase catalytic domain-containing protein3.4e-0672.97Show/hide
Query:  ESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
        ES   ADS+ L FWGQDRV SWEHN TRWNSLLP  R
Subjt:  ESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
A0A5D3C3J6 Gag/pol protein6.8e-0771.05Show/hide
Query:  GESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
        GES    DSI L FWGQDRVGSWEHN TRWNS +P  R
Subjt:  GESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIR
A0A5D3E3M6 Uncharacterized protein8.3e-0561.54Show/hide
Query:  SDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSR
        SD     + L  WGQD+VGSWEHN  RWNSL+PD R SR
Subjt:  SDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGACCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCTTACAAGATGGAATTCACTCCTTCCCGA
TATTAGGGTAAGTAGAGGTCCATCAAGTCCCACCGGTAGCTCTATAAGGGCGTTGAGGGAAAAAAACCTTAGATTATTGGGGTTCCCACAAGCCACTCAACGCACACTCC
TTGGAGGATACCGGTGCAATCTTGGTGGTGGTGTTCGTGATTTTTGCAGCAAGATCAAGATCAAAAGTTGGGTGTTTGTTGCTGTAATTTTCTGTCCAACGGAGTTTTTG
GTGAAGTGGATCAAGAACGTCTTCAAGGGATTTAAGAAGGATGGTGATCTTGCTGCTTTGGTGGGCGACGTCACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGC
GCACTCGTTGGCGCGTTTTGCTGTTACTCTGAATCATTTGGATAGTTTTAATTTTTTGGCTTCTTCCATTTCGGAAGAAGGGAAAACAGATGGAAGAGCTACAGAGCAAG
AGGAGAAAGTAGAGAATAGAGTTCGAGATCCCTTCTTCAATGACGAAGAGGGGTTTAAATACTTGCTCATGCTCCCAGGATGTTTAGGAATTCGGAGACGTTTCAGGACG
AACCAGGCGGAACCGGGGCGTCCAGAGGCAGCAGGGACCGAACGGAGTAGAAAGGAACTCGGCCCACGCAAGCGGGCTGACCATGGGCCGAGGCCGAGCAAGGAGTCAGG
CCAAAAGCCCGATCCCTTCGGCTTTGGCCCGACCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGACCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCTTACAAGATGGAATTCACTCCTTCCCGA
TATTAGGGTAAGTAGAGGTCCATCAAGTCCCACCGGTAGCTCTATAAGGGCGTTGAGGGAAAAAAACCTTAGATTATTGGGGTTCCCACAAGCCACTCAACGCACACTCC
TTGGAGGATACCGGTGCAATCTTGGTGGTGGTGTTCGTGATTTTTGCAGCAAGATCAAGATCAAAAGTTGGGTGTTTGTTGCTGTAATTTTCTGTCCAACGGAGTTTTTG
GTGAAGTGGATCAAGAACGTCTTCAAGGGATTTAAGAAGGATGGTGATCTTGCTGCTTTGGTGGGCGACGTCACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGC
GCACTCGTTGGCGCGTTTTGCTGTTACTCTGAATCATTTGGATAGTTTTAATTTTTTGGCTTCTTCCATTTCGGAAGAAGGGAAAACAGATGGAAGAGCTACAGAGCAAG
AGGAGAAAGTAGAGAATAGAGTTCGAGATCCCTTCTTCAATGACGAAGAGGGGTTTAAATACTTGCTCATGCTCCCAGGATGTTTAGGAATTCGGAGACGTTTCAGGACG
AACCAGGCGGAACCGGGGCGTCCAGAGGCAGCAGGGACCGAACGGAGTAGAAAGGAACTCGGCCCACGCAAGCGGGCTGACCATGGGCCGAGGCCGAGCAAGGAGTCAGG
CCAAAAGCCCGATCCCTTCGGCTTTGGCCCGACCCTTTGA
Protein sequenceShow/hide protein sequence
MGESDLFADSISLPFWGQDRVGSWEHNLTRWNSLLPDIRVSRGPSSPTGSSIRALREKNLRLLGFPQATQRTLLGGYRCNLGGGVRDFCSKIKIKSWVFVAVIFCPTEFL
VKWIKNVFKGFKKDGDLAALVGDVTFSFSPRESNVEAHSLARFAVTLNHLDSFNFLASSISEEGKTDGRATEQEEKVENRVRDPFFNDEEGFKYLLMLPGCLGIRRRFRT
NQAEPGRPEAAGTERSRKELGPRKRADHGPRPSKESGQKPDPFGFGPTL