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Lag0028773 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028773
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr8:30493085..30493591
RNA-Seq ExpressionLag0028773
SyntenyLag0028773
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016199385.1 uncharacterized protein LOC107640375 [Arachis ipaensis]1.5e-0627.41Show/hide
Query:  LEDDRHVSPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGEHSITTNV
        + +D H + +   ++ D A N+   G G   ++L+    ++A   ++ +   S   AE +A+  G+ L  RLQI  +  Y DSS  +  I GE  +   +
Subjt:  LEDDRHVSPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGEHSITTNV

Query:  YQ--WVIQTQALAKDFASLNFVHISRTRNRRADYL
         +  W++ T+ L   F   + +H++R +N RAD L
Subjt:  YQ--WVIQTQALAKDFASLNFVHISRTRNRRADYL

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]2.5e-0633.05Show/hide
Query:  SPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGEHSITTNVYQWVIQT
        SP    +  D A   +N  TG+GVV     G ++ AM  +  + Y PL  E  AI +G+ L Q L +  V + SDS N+I +I  E+  +     WV   
Subjt:  SPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGEHSITTNVYQWVIQT

Query:  QALAKDFASLNFVHISRT
           A +F  + F+HI R+
Subjt:  QALAKDFASLNFVHISRT

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]5.7e-0629.38Show/hide
Query:  RCEWIQCYWLETRPTVVEIMGRNGLEDDRHVSPI--ACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQI
        + EWI  Y  E R      M R     +    P+     + TD AV  + +G+G+GV++ + +  ++ AM ++  +  +PL A+  AI +G+SL  RL +
Subjt:  RCEWIQCYWLETRPTVVEIMGRNGLEDDRHVSPI--ACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQI

Query:  TDVCLYSDSSNAIQMIMGEHSITTNVYQWVIQTQALAKDFASLNFVHISRTRNRRADYLG
          V + +DS  A+ +I  +         WV   +A A+DF  + F H+ R  N  A +LG
Subjt:  TDVCLYSDSSNAIQMIMGEHSITTNVYQWVIQTQALAKDFASLNFVHISRTRNRRADYLG

XP_030926327.1 uncharacterized protein LOC115953035, partial [Quercus lobata]1.2e-0834.13Show/hide
Query:  VYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPL--AAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGE-HSITTNVYQWVIQTQAL
        VY D A N+   G+G+G+V++ PDG   AA+E   ++G+S     AE +A+ +G++++QR+    +  +SDS   ++ +MGE  +  T + +++ Q + L
Subjt:  VYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPL--AAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGE-HSITTNVYQWVIQTQAL

Query:  AKDFASLNFVHISRTRNRRADYLGAV
          +F S N  HISR+ N  AD L  +
Subjt:  AKDFASLNFVHISRTRNRRADYLGAV

XP_030939953.1 uncharacterized protein LOC115964855 [Quercus lobata]3.3e-0628.24Show/hide
Query:  PIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPL--AAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGE-HSITTNVYQWVI
        P     Y D A N+   G G+G+V++ P+G     +E   ++G+S     AE +A+ +G+S++++L    + ++SDS   +  + GE  +    + ++++
Subjt:  PIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPL--AAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGE-HSITTNVYQWVI

Query:  QTQALAKDFASLNFVHISRTRNRRADYLGAV
        Q + L   F S + +H+SR+RN  AD L  +
Subjt:  QTQALAKDFASLNFVHISRTRNRRADYLGAV

TrEMBL top hitse value%identityAlignment
A0A6J1DJL6 uncharacterized protein LOC1110217111.2e-0633.05Show/hide
Query:  SPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGEHSITTNVYQWVIQT
        SP    +  D A   +N  TG+GVV     G ++ AM  +  + Y PL  E  AI +G+ L Q L +  V + SDS N+I +I  E+  +     WV   
Subjt:  SPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGEHSITTNVYQWVIQT

Query:  QALAKDFASLNFVHISRT
           A +F  + F+HI R+
Subjt:  QALAKDFASLNFVHISRT

A0A6J1DZK3 uncharacterized protein LOC1110249682.7e-0629.38Show/hide
Query:  RCEWIQCYWLETRPTVVEIMGRNGLEDDRHVSPI--ACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQI
        + EWI  Y  E R      M R     +    P+     + TD AV  + +G+G+GV++ + +  ++ AM ++  +  +PL A+  AI +G+SL  RL +
Subjt:  RCEWIQCYWLETRPTVVEIMGRNGLEDDRHVSPI--ACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQI

Query:  TDVCLYSDSSNAIQMIMGEHSITTNVYQWVIQTQALAKDFASLNFVHISRTRNRRADYLG
          V + +DS  A+ +I  +         WV   +A A+DF  + F H+ R  N  A +LG
Subjt:  TDVCLYSDSSNAIQMIMGEHSITTNVYQWVIQTQALAKDFASLNFVHISRTRNRRADYLG

A0A6P4DDX6 Ribonuclease H1.4e-0526.67Show/hide
Query:  LEDDRHVSPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGEHSITTNV
        + +D   + ++  ++ D A N+   G G   ++L     ++A   +      S   AE +A+  G+ L  +LQI+ + +Y DSS  +  I GE  +   +
Subjt:  LEDDRHVSPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGEHSITTNV

Query:  YQ--WVIQTQALAKDFASLNFVHISRTRNRRADYL
         +  W+I T+ L   F   + +H++R +N RAD L
Subjt:  YQ--WVIQTQALAKDFASLNFVHISRTRNRRADYL

A0A7N2KPI0 Ribonuclease H1.6e-0631.75Show/hide
Query:  VYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPL--AAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGE-HSITTNVYQWVIQTQAL
        VY D A N+   G+G+G+V++ PDG   AA+E   ++G+S     AE +A+ +G++++QRL    + ++SDS   +  + GE  +    + +++ Q + L
Subjt:  VYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPL--AAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGE-HSITTNVYQWVIQTQAL

Query:  AKDFASLNFVHISRTRNRRADYLGAV
           F S N  HISR+ +  A+ L  +
Subjt:  AKDFASLNFVHISRTRNRRADYLGAV

A0A7N2L8F2 Ribonuclease H4.5e-0934.13Show/hide
Query:  VYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPL--AAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGE-HSITTNVYQWVIQTQAL
        +Y D A N+   G+G+G+V++ PDG   AA+E   ++G+S +   AE +A+ +G++++QRL    +  +SDS   +  +MGE  +  T + +++ Q + L
Subjt:  VYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPL--AAECQAISKGISLLQRLQITDVCLYSDSSNAIQMIMGE-HSITTNVYQWVIQTQAL

Query:  AKDFASLNFVHISRTRNRRADYLGAV
          +F S N  HISR+ N  AD L  +
Subjt:  AKDFASLNFVHISRTRNRRADYLGAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGTAATGGAGTGGACACAACGTTGTGAATGGATCCAATGTTATTGGCTCGAAACTCGACCTACAGTTGTGGAGATTATGGGGCGAAATGGATTAGAAGATGATAG
ACATGTTAGTCCTATTGCTTGCCACGTATATACGGATGTTGCGGTGAATAGGAACAATGATGGAACTGGTTTAGGAGTAGTTGTGCTTCAACCGGATGGGTTCCTTCTCG
CTGCCATGGAGATGGAGAATAAAATTGGGTACTCACCTTTGGCAGCAGAGTGCCAAGCCATTAGCAAAGGCATCAGTCTATTACAACGGTTACAAATTACAGATGTTTGC
CTTTACTCTGACTCTAGCAATGCTATTCAAATGATTATGGGGGAGCATAGCATTACTACGAATGTGTATCAATGGGTGATCCAAACTCAGGCTCTTGCAAAGGATTTTGC
TTCGTTAAATTTTGTTCATATTTCTAGAACTAGAAATAGGCGAGCTGATTATTTAGGGGCCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGTAATGGAGTGGACACAACGTTGTGAATGGATCCAATGTTATTGGCTCGAAACTCGACCTACAGTTGTGGAGATTATGGGGCGAAATGGATTAGAAGATGATAG
ACATGTTAGTCCTATTGCTTGCCACGTATATACGGATGTTGCGGTGAATAGGAACAATGATGGAACTGGTTTAGGAGTAGTTGTGCTTCAACCGGATGGGTTCCTTCTCG
CTGCCATGGAGATGGAGAATAAAATTGGGTACTCACCTTTGGCAGCAGAGTGCCAAGCCATTAGCAAAGGCATCAGTCTATTACAACGGTTACAAATTACAGATGTTTGC
CTTTACTCTGACTCTAGCAATGCTATTCAAATGATTATGGGGGAGCATAGCATTACTACGAATGTGTATCAATGGGTGATCCAAACTCAGGCTCTTGCAAAGGATTTTGC
TTCGTTAAATTTTGTTCATATTTCTAGAACTAGAAATAGGCGAGCTGATTATTTAGGGGCCGTTTGA
Protein sequenceShow/hide protein sequence
MPVMEWTQRCEWIQCYWLETRPTVVEIMGRNGLEDDRHVSPIACHVYTDVAVNRNNDGTGLGVVVLQPDGFLLAAMEMENKIGYSPLAAECQAISKGISLLQRLQITDVC
LYSDSSNAIQMIMGEHSITTNVYQWVIQTQALAKDFASLNFVHISRTRNRRADYLGAV