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Lag0028781 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028781
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationchr8:30640284..30641874
RNA-Seq ExpressionLag0028781
SyntenyLag0028781
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049792.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.3e-1551.55Show/hide
Query:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEEVCGWKVVAIPN
        P       DP  S    T    T + K D  IDPEK+ KDNKTV GHL NHM+D +FDLFVV KS+K IW TLESRYG DDA +++    K + IP+
Subjt:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEEVCGWKVVAIPN

TYK11299.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.8e-1454.65Show/hide
Query:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE
        P       DP  S    T    T++ K D  IDPEK+ KDNKTV GHL NHM+D +FDLFVV KS+K IW TLESRYG DDA +++
Subjt:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE

XP_008445782.1 PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]2.8e-1454.65Show/hide
Query:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE
        P       DP  S    T    T++ K D  IDPEK+ KDNKTV GHL NHM+D +FDLFVV KS+K IW TLESRYG DDA +++
Subjt:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]2.2e-1472.73Show/hide
Query:  IDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE
        ++ +KFEKDNKT+ GHL NHMND LFDLFVV KS+KVIWDTLESRYG DDA + +
Subjt:  IDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE

XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]2.6e-1578.18Show/hide
Query:  IDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE
        I+ +KFEKDNKTV GHL NHMNDSLFDLFVV KS+KVIWDTLESRYG DDA + +
Subjt:  IDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE

TrEMBL top hitse value%identityAlignment
A0A1S3BE75 uncharacterized protein LOC1034887071.4e-1454.65Show/hide
Query:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE
        P       DP  S    T    T++ K D  IDPEK+ KDNKTV GHL NHM+D +FDLFVV KS+K IW TLESRYG DDA +++
Subjt:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE

A0A5A7U1X6 Ty1-copia retrotransposon protein1.6e-1551.55Show/hide
Query:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEEVCGWKVVAIPN
        P       DP  S    T    T + K D  IDPEK+ KDNKTV GHL NHM+D +FDLFVV KS+K IW TLESRYG DDA +++    K + IP+
Subjt:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEEVCGWKVVAIPN

A0A5D3CM58 Ty1-copia retrotransposon protein1.4e-1454.65Show/hide
Query:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE
        P       DP  S    T    T++ K D  IDPEK+ KDNKTV GHL NHM+D +FDLFVV KS+K IW TLESRYG DDA +++
Subjt:  PLACEVQPDPNDSREVQTG---TQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE

A0A6J1DHJ4 uncharacterized protein LOC1110211471.1e-1472.73Show/hide
Query:  IDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE
        ++ +KFEKDNKT+ GHL NHMND LFDLFVV KS+KVIWDTLESRYG DDA + +
Subjt:  IDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE

A0A6J1DWN1 uncharacterized protein LOC1110251971.2e-1578.18Show/hide
Query:  IDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE
        I+ +KFEKDNKTV GHL NHMNDSLFDLFVV KS+KVIWDTLESRYG DDA + +
Subjt:  IDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKSSKVIWDTLESRYGDDDADKEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAATTTAGAGTTGAGAATAGTGTTTTTATACAATCATTTTTCCTTGCTCTTGTAAATGTGGTTAAGAGTGGTACTAAGACTTCTTCCCACGCGCTTCGCCGTCG
GTCGGACAGGCGAGTGGATTCAAGTCAAGGTCGTCCTTTAGCATGTGAGGTCCAACCTGATCCTAATGATTCTAGAGAGGTTCAAACTGGTACTCAAAAATCAAAGGGCG
ATGTTGACATTGATCCAGAAAAGTTCGAGAAAGACAACAAGACGGTTTGTGGTCATCTTCGCAATCATATGAATGACTCGCTGTTTGATTTGTTTGTTGTTCACAAATCT
TCTAAGGTAATCTGGGACACTCTTGAGTCCAGATATGGCGATGATGATGCAGACAAGGAAGAAGTATGTGGTTGGAAAGTGGTTGCAATTCCAAATGGTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAATTTAGAGTTGAGAATAGTGTTTTTATACAATCATTTTTCCTTGCTCTTGTAAATGTGGTTAAGAGTGGTACTAAGACTTCTTCCCACGCGCTTCGCCGTCG
GTCGGACAGGCGAGTGGATTCAAGTCAAGGTCGTCCTTTAGCATGTGAGGTCCAACCTGATCCTAATGATTCTAGAGAGGTTCAAACTGGTACTCAAAAATCAAAGGGCG
ATGTTGACATTGATCCAGAAAAGTTCGAGAAAGACAACAAGACGGTTTGTGGTCATCTTCGCAATCATATGAATGACTCGCTGTTTGATTTGTTTGTTGTTCACAAATCT
TCTAAGGTAATCTGGGACACTCTTGAGTCCAGATATGGCGATGATGATGCAGACAAGGAAGAAGTATGTGGTTGGAAAGTGGTTGCAATTCCAAATGGTGGATGA
Protein sequenceShow/hide protein sequence
MDKFRVENSVFIQSFFLALVNVVKSGTKTSSHALRRRSDRRVDSSQGRPLACEVQPDPNDSREVQTGTQKSKGDVDIDPEKFEKDNKTVCGHLRNHMNDSLFDLFVVHKS
SKVIWDTLESRYGDDDADKEEVCGWKVVAIPNGG