; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028790 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028790
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr8:30761332..30761733
RNA-Seq ExpressionLag0028790
SyntenyLag0028790
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1549.56Show/hide
Query:  TRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSN-ETSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASL
        TRSRS+E Q  ++  P    K+   ++K  + E+ I EN  + +    S+RSN E S P++MSVM+TD  TSE+RMAE+EKK++ML+K VEE+D EIA L
Subjt:  TRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSN-ETSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASL

Query:  RNQMENRDVAESS
        +N +E+RD AESS
Subjt:  RNQMENRDVAESS

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-1646.62Show/hide
Query:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE
        M S++A SN + +SN+Y G ITRSRSK    E +Q   +A  +L+ + +S +  I I EN +      SS +S + + PDVMSVMM D  T E  MAE+E
Subjt:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS
        +KI+ L+K VEE+D EI +LR QM  R+ AESS
Subjt:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.4e-1544.36Show/hide
Query:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE
        M S++A S  +A+S++Y G ITRSRSK      +Q   IA  +L+ + +S +  I I EN +   +  +S RS + + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS
        +KI++L+K+V+E+D EIA+L+ QM+ R+ AESS
Subjt:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.4e-1544.36Show/hide
Query:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE
        M S++A S  +A+S++Y G ITRSRSK      +Q   IA  +L+ + +S +  I I EN +   +  +S RS + + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS
        +KI++L+K+V+E+D EIA+L+ QM+ R+ AESS
Subjt:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.4e-1544.36Show/hide
Query:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE
        M S++A S  +A+S++Y G ITRSRSK      +Q   IA  +L+ + +S +  I I EN +   +  +S RS + + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS
        +KI++L+K+V+E+D EIA+L+ QM+ R+ AESS
Subjt:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS

TrEMBL top hitse value%identityAlignment
A0A5A7TP10 Ty3-gypsy retrotransposon protein6.7e-1649.56Show/hide
Query:  TRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSN-ETSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASL
        TRSRS+E Q  ++  P    K+   ++K  + E+ I EN  + +    S+RSN E S P++MSVM+TD  TSE+RMAE+EKK++ML+K VEE+D EIA L
Subjt:  TRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSN-ETSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASL

Query:  RNQMENRDVAESS
        +N +E+RD AESS
Subjt:  RNQMENRDVAESS

A0A5A7VCU1 Ty3-gypsy retrotransposon protein1.7e-1442.86Show/hide
Query:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE
        M S++A S  + +S+ Y G ITR+RSK    E +Q   +   +L+ + +S +  I I EN +      +S +S +   PDVMSVMMTD  T+E  MAE+E
Subjt:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS
        +KI+ L+K+VEE+D EI +LR QM+ R+  ESS
Subjt:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS

A0A5D3BDK1 Ty3-gypsy retrotransposon protein1.7e-1444.36Show/hide
Query:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE
        M S++A SN + +S++Y G ITR+RSK    E +Q   IA  +L+ + +S +  I I EN +      +S +S + + PDVMSV+MTD  T+E  MAE+E
Subjt:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS
        +KI+ L+K VEE+D EI +LR QM  R  AES+
Subjt:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.8e-1646.62Show/hide
Query:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE
        M S++A SN + +SN+Y G ITRSRSK    E +Q   +A  +L+ + +S +  I I EN +      SS +S + + PDVMSVMM D  T E  MAE+E
Subjt:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS
        +KI+ L+K VEE+D EI +LR QM  R+ AESS
Subjt:  KKISMLLKMVEEKDQEIASLRNQMENRDVAESS

A0A5D3DR45 Ty3-gypsy retrotransposon protein2.2e-1447.41Show/hide
Query:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPV-IANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSN-ETSSPDVMSVMMTDAGTSEERMAE
        MTS+  TSN  A S+    S TRSRS++TQ  ++  P  +A  +   M+K  +  I I EN  + +   SS+RSN E    ++MSVM+T+  TSE+RMAE
Subjt:  MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPV-IANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSN-ETSSPDVMSVMMTDAGTSEERMAE

Query:  VEKKISMLLKMVEEKDQEIASLRNQMENRDVAESS
        +EKK++ML+K VEE+D EIASL+N +E+R+ AESS
Subjt:  VEKKISMLLKMVEEKDQEIASLRNQMENRDVAESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCTGAAGAAGCTACTTCAAATATCGCTGCTTCAAGCAACTCCTATATGGGGTCAATTACTCGCAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAA
ACTCCTGTCATTGCAAACAAGATGCTGAGACACATGACAAAATCTGCTCAATTTGAAATCACCATTGCAGAAAATCTGATGCTTGGCAAATTCATCTATTCTTCT
CAGCGATCAAACGAAACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCCGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAGCATG
TTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAATCAGATGGAAAATCGGGATGTTGCTGAATCGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTCTGAAGAAGCTACTTCAAATATCGCTGCTTCAAGCAACTCCTATATGGGGTCAATTACTCGCAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAA
ACTCCTGTCATTGCAAACAAGATGCTGAGACACATGACAAAATCTGCTCAATTTGAAATCACCATTGCAGAAAATCTGATGCTTGGCAAATTCATCTATTCTTCT
CAGCGATCAAACGAAACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCCGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAGCATG
TTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAATCAGATGGAAAATCGGGATGTTGCTGAATCGAGTTAG
Protein sequenceShow/hide protein sequence
MTSEEATSNIAASSNSYMGSITRSRSKETQHEDNQTPVIANKMLRHMTKSAQFEITIAENLMLGKFIYSSQRSNETSSPDVMSVMMTDAGTSEERMAEVEKKISM
LLKMVEEKDQEIASLRNQMENRDVAESS