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Lag0028806 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028806
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:30975398..30975796
RNA-Seq ExpressionLag0028806
SyntenyLag0028806
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2550819.1 hypothetical protein F2Q68_00035353, partial [Brassica cretica]4.0e-0732.77Show/hide
Query:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSS
        DA+W       G G+ ME   G  +  G+    + LS LHAE   LLW +K +       +  +SDCL+L++++ ++E C       FD+ + +   F  
Subjt:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSS

Query:  CQFMFVRRDDNVKAHCLAK
        C   FV R  N++A CLAK
Subjt:  CQFMFVRRDDNVKAHCLAK

PWA73504.1 reverse transcriptase [Artemisia annua]4.0e-0733.33Show/hide
Query:  TDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFS
        TDA+W   T   G G+    H G  +  GA+      S L AE  A++W +  A  KN + +V +SD L L+  L  + +       +F QI+     FS
Subjt:  TDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFS

Query:  SCQFMFVRRDDNVKAHCLAKHGL
        +C + FV+R+ N+ AH +A  GL
Subjt:  SCQFMFVRRDDNVKAHCLAKHGL

XP_010512831.1 PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]8.9e-0734.15Show/hide
Query:  TDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFS
        +DAAW     A G GW  + H G  V +G+ P     + L AEG A+L  +  A    +  L+  SD + L++ + K E  P +   I   I+++   FS
Subjt:  TDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFS

Query:  SCQFMFVRRDDNVKAHCLAKHGL
           F F+ R +NV+A CLAK+ L
Subjt:  SCQFMFVRRDDNVKAHCLAKHGL

XP_024011123.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112086436 [Eutrema salsugineum]4.0e-0733.33Show/hide
Query:  WTDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFF
        +TDA+W +G   +GYGW +E+ GG  +  G     +  S LH E G+L+W ++C  R ++R +   +DCL L+ ++      P  F    D ++E+   F
Subjt:  WTDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFF

Query:  SSCQFMFVRRDDNVKAHCLA
        SS    +V R +N +A  LA
Subjt:  SSCQFMFVRRDDNVKAHCLA

XP_024016341.1 uncharacterized protein LOC112089817 [Eutrema salsugineum]5.2e-0733.33Show/hide
Query:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMY----G
        DA+W+     +G+GW +E+ G GG   G Q   + LS+LHAE   LLW + C + + +  ++ ++DCL L+ +       P D+ PIF   +E++    G
Subjt:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMY----G

Query:  FFSSCQFMFVRRDDNVKAHCLAK
         FS      + R  N++A  LAK
Subjt:  FFSSCQFMFVRRDDNVKAHCLAK

TrEMBL top hitse value%identityAlignment
A0A2U1NJ09 Reverse transcriptase1.9e-0733.33Show/hide
Query:  TDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFS
        TDA+W   T   G G+    H G  +  GA+      S L AE  A++W +  A  KN + +V +SD L L+  L  + +       +F QI+     FS
Subjt:  TDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFS

Query:  SCQFMFVRRDDNVKAHCLAKHGL
        +C + FV+R+ N+ AH +A  GL
Subjt:  SCQFMFVRRDDNVKAHCLAKHGL

A0A2U1NJ84 RNase H domain-containing protein2.4e-0530.33Show/hide
Query:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSS
        DAAW   +   G G+      G  +  GA+      S + AE  A+ W    A+ +    +V +SD L LI  L  + + P++   +F  I+   G F+ 
Subjt:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSS

Query:  CQFMFVRRDDNVKAHCLAKHGL
        C++ FVRR+ N+ AH +A   L
Subjt:  CQFMFVRRDDNVKAHCLAKHGL

A0A3N6PZ39 Uncharacterized protein1.3e-0631.25Show/hide
Query:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSS
        D +W       G G+ ME   G  +  G+    + LS LHAE G LLW +K +       +  +SD ++L++++ ++E  P +   +FD+   +  +F  
Subjt:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSS

Query:  CQFMFVRRDDNVKAHCLAK----HGLYL
        C   FV R  N++A CLAK    HG +L
Subjt:  CQFMFVRRDDNVKAHCLAK----HGLYL

A0A6D2J0Y5 Uncharacterized protein5.7e-0732.77Show/hide
Query:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSS
        D AW       G GW+      G    G     + +SSL  E   LLW ++C  R N   +V ++DC  ++Q++ K E  PV F  + D+I      F+S
Subjt:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSS

Query:  CQFMFVRRDDNVKAHCLAK
        C  M++ R +N KA  LA+
Subjt:  CQFMFVRRDDNVKAHCLAK

A0A6J0LUK6 uncharacterized protein LOC1088350831.6e-0633.6Show/hide
Query:  WTDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFF
        +TDAAW V T  TG GW +++HG   +++G        S+L AE  A+   L  A    + R+  K+DC  L+ I+      P D   I   I  +   F
Subjt:  WTDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFF

Query:  SSCQFMFVRRDDNVKAHCLAKHGLY
            F F+ R+ N +A  LAK  LY
Subjt:  SSCQFMFVRRDDNVKAHCLAKHGLY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-0827.64Show/hide
Query:  TDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFS
        TDA W +     G GW +    GG +  GA+   +  + L AE  AL W +    R N +R++ +SD   L+ +L   +  P   +P  + I ++   F 
Subjt:  TDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFS

Query:  SCQFMFVRRDDNVKAHCLAKHGL
          +F F  R  N  A  +A+  +
Subjt:  SCQFMFVRRDDNVKAHCLAKHGL

AT3G09510.1 Ribonuclease H-like superfamily protein1.8e-0530.4Show/hide
Query:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGF---
        DA + V  L    GW +  H G  +S G+       + L AE  ALL  L+    +   ++  + DC  LI ++       + F       +E   F   
Subjt:  DAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGF---

Query:  -FSSCQFMFVRRDDNVKAHCLAKHG
         F+S QF F+RR  N  AH LAK+G
Subjt:  -FSSCQFMFVRRDDNVKAHCLAKHG

AT5G38920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0430.68Show/hide
Query:  SSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSSCQFMFVRRDDNVKAHCLAKHGLYL
        S+L  E  A+ W +    R N R+++ +SD  +L+ IL      P+  +PI   I  +   F   +F+F+ R  N  A  +AK  L L
Subjt:  SSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSSCQFMFVRRDDNVKAHCLAKHGLYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGACAGATGCTGCGTGGATGGTTGGGACGTTAGCCACGGGTTACGGGTGGCATATGGAGGAACATGGTGGAGGTGGTGTCAGTGAAGGAGCACAGCCAGGTGGCAA
ATGCCTCAGCAGTCTTCATGCTGAGGGTGGTGCACTGTTATGGGGATTAAAATGTGCAAAGAGGAAAAATATGAGAAGGCTTGTGGCCAAGTCTGATTGTTTGAGATTGA
TCCAAATTTTGGGGAAGAAGGAATTATGTCCAGTGGATTTTGAGCCTATTTTTGACCAAATAATGGAGATGTATGGCTTTTTTAGTTCTTGTCAATTCATGTTTGTGAGA
CGAGATGATAATGTAAAGGCGCATTGCCTAGCCAAACATGGCCTTTATTTACTGAGTTGCTCTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGACAGATGCTGCGTGGATGGTTGGGACGTTAGCCACGGGTTACGGGTGGCATATGGAGGAACATGGTGGAGGTGGTGTCAGTGAAGGAGCACAGCCAGGTGGCAA
ATGCCTCAGCAGTCTTCATGCTGAGGGTGGTGCACTGTTATGGGGATTAAAATGTGCAAAGAGGAAAAATATGAGAAGGCTTGTGGCCAAGTCTGATTGTTTGAGATTGA
TCCAAATTTTGGGGAAGAAGGAATTATGTCCAGTGGATTTTGAGCCTATTTTTGACCAAATAATGGAGATGTATGGCTTTTTTAGTTCTTGTCAATTCATGTTTGTGAGA
CGAGATGATAATGTAAAGGCGCATTGCCTAGCCAAACATGGCCTTTATTTACTGAGTTGCTCTGAATAA
Protein sequenceShow/hide protein sequence
MWTDAAWMVGTLATGYGWHMEEHGGGGVSEGAQPGGKCLSSLHAEGGALLWGLKCAKRKNMRRLVAKSDCLRLIQILGKKELCPVDFEPIFDQIMEMYGFFSSCQFMFVR
RDDNVKAHCLAKHGLYLLSCSE