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Lag0028825 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028825
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:31496664..31497017
RNA-Seq ExpressionLag0028825
SyntenyLag0028825
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149380.1 uncharacterized protein LOC111017810 [Momordica charantia]1.6e-0738.32Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCPTKNEADEEKPVAKAQTAP
        MDK    + Q Q    S+SGVKRK   F    +    Q    +  A P+C +C K H G C +G R+CFKC KEGH+AR+CP      +    A  Q  P
Subjt:  MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCPTKNEADEEKPVAKAQTAP

Query:  APGVIKG
        A    +G
Subjt:  APGVIKG

XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]8.5e-0945.78Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQ-KAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCP
        MDK+V+ KA       S+SGVKRK  P    P  +AP+ Q Q +    P+C  C K H GQC  G + CF+CG+E H+AR+CP
Subjt:  MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQ-KAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCP

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]4.2e-0843.9Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQC
        MDK+V+ + QP     S+SGVKRK  P +  QP +AP++  Q +    P+C +C K + GQC  G   CF+C +EGH+AR+C
Subjt:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQC

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]3.4e-1046.99Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCP
        MDK+V+ KA P     S+SGVKRK P  +     +AP++Q Q +    P+C  C K H GQC  G + CF+CG+EGH+AR+CP
Subjt:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCP

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]3.8e-0945.12Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQC
        MD +V+   QP     S+SGVKRK  P +  QP +AP++  Q +    P+C +C K   GQC  G R CF+CG+EGH+AR+C
Subjt:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQC

TrEMBL top hitse value%identityAlignment
A0A6J1D5J7 uncharacterized protein LOC1110178107.7e-0838.32Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCPTKNEADEEKPVAKAQTAP
        MDK    + Q Q    S+SGVKRK   F    +    Q    +  A P+C +C K H G C +G R+CFKC KEGH+AR+CP      +    A  Q  P
Subjt:  MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCPTKNEADEEKPVAKAQTAP

Query:  APGVIKG
        A    +G
Subjt:  APGVIKG

A0A6J1DL73 uncharacterized protein LOC1110221444.1e-0945.78Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQ-KAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCP
        MDK+V+ KA       S+SGVKRK  P    P  +AP+ Q Q +    P+C  C K H GQC  G + CF+CG+E H+AR+CP
Subjt:  MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQ-KAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCP

A0A6J1DQJ4 uncharacterized protein LOC1110228852.0e-0843.9Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQC
        MDK+V+ + QP     S+SGVKRK  P +  QP +AP++  Q +    P+C +C K + GQC  G   CF+C +EGH+AR+C
Subjt:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQC

A0A6J1DUM2 uncharacterized protein LOC1110232471.7e-1046.99Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCP
        MDK+V+ KA P     S+SGVKRK P  +     +AP++Q Q +    P+C  C K H GQC  G + CF+CG+EGH+AR+CP
Subjt:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCP

A0A6J1DYU5 uncharacterized protein LOC1110255171.8e-0945.12Show/hide
Query:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQC
        MD +V+   QP     S+SGVKRK  P +  QP +AP++  Q +    P+C +C K   GQC  G R CF+CG+EGH+AR+C
Subjt:  MDKNVARKAQPQWGEASASGVKRK-PPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain6.7e-0460Show/hide
Query:  GGRVCFKCGKEGHYARQCPTKNEAD
        GG  CFKCGK GH+AR+CP+++  D
Subjt:  GGRVCFKCGKEGHYARQCPTKNEAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGAACGTGGCAAGGAAAGCGCAACCTCAGTGGGGAGAAGCTTCAGCATCAGGGGTCAAAAGGAAGCCTCCACCTTTCATTGGACAACCTCAGAAGGCCCCACG
ACAGCAGATTCAGGGGAAAGCTCCTGCTCTTCCCTTATGCAATGCTTGTGGCAAATACCACTTTGGGCAGTGTCAGGTGGGTGGAAGAGTATGCTTCAAGTGTGGGAAGG
AAGGTCATTATGCAAGGCAATGTCCGACCAAGAATGAAGCCGATGAAGAAAAGCCAGTTGCAAAAGCCCAGACTGCGCCAGCTCCGGGGGTAATCAAAGGGCACGTGTCT
TTGCACTCACAAGGAAGAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGAACGTGGCAAGGAAAGCGCAACCTCAGTGGGGAGAAGCTTCAGCATCAGGGGTCAAAAGGAAGCCTCCACCTTTCATTGGACAACCTCAGAAGGCCCCACG
ACAGCAGATTCAGGGGAAAGCTCCTGCTCTTCCCTTATGCAATGCTTGTGGCAAATACCACTTTGGGCAGTGTCAGGTGGGTGGAAGAGTATGCTTCAAGTGTGGGAAGG
AAGGTCATTATGCAAGGCAATGTCCGACCAAGAATGAAGCCGATGAAGAAAAGCCAGTTGCAAAAGCCCAGACTGCGCCAGCTCCGGGGGTAATCAAAGGGCACGTGTCT
TTGCACTCACAAGGAAGAAGCTAA
Protein sequenceShow/hide protein sequence
MDKNVARKAQPQWGEASASGVKRKPPPFIGQPQKAPRQQIQGKAPALPLCNACGKYHFGQCQVGGRVCFKCGKEGHYARQCPTKNEADEEKPVAKAQTAPAPGVIKGHVS
LHSQGRS