CuGenDBv2

Gene ID	Lag0028840
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DEAD-box ATP-dependent RNA helicase 39
Genome location	chr8:31705645..31706273
RNA-Seq Expression	Lag0028840
Synteny	Lag0028840
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR014014 - RNA helicase, DEAD-box type, Q motif IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059512.1 DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo var. makuwa]

3.4e-23

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE A KTKPTR+TLS SVGSAEDEMKKSEKK KKLVESFEELGLNEEVMGAVREM I+VPTEIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

TYK14098.1 DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo var. makuwa]

3.4e-23

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE A KTKPTR+TLS SVGSAEDEMKKSEKK KKLVESFEELGLNEEVMGAVREM I+VPTEIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

XP_004139692.1 DEAD-box ATP-dependent RNA helicase 39 [Cucumis sativus]

6.4e-22

85.33

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSE-KKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE A KTKPTR+TLS SVGSAEDEMKKSE KKKKL ESFEELGLNEEVMGAVREM I+VP+EIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSE-KKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

XP_008461901.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo]

3.4e-23

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE A KTKPTR+TLS SVGSAEDEMKKSEKK KKLVESFEELGLNEEVMGAVREM I+VPTEIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

XP_022143665.1 DEAD-box ATP-dependent RNA helicase 39 [Momordica charantia]

3.2e-21

84.21

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKK--LVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE ASKTK  RSTLS SVG AEDEM K+EKKKK  LVESFEELGLNEEVMGAVREM IEVPTEIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKK--LVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K426 Dead box ATP-dependent RNA helicase

3.1e-22

85.33

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSE-KKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE A KTKPTR+TLS SVGSAEDEMKKSE KKKKL ESFEELGLNEEVMGAVREM I+VP+EIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSE-KKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

A0A1S3CFM7 DEAD-box ATP-dependent RNA helicase 39

1.7e-23

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE A KTKPTR+TLS SVGSAEDEMKKSEKK KKLVESFEELGLNEEVMGAVREM I+VPTEIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

A0A5A7UUE0 DEAD-box ATP-dependent RNA helicase 39

1.7e-23

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE A KTKPTR+TLS SVGSAEDEMKKSEKK KKLVESFEELGLNEEVMGAVREM I+VPTEIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

A0A5D3CSB8 DEAD-box ATP-dependent RNA helicase 39

1.7e-23

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE A KTKPTR+TLS SVGSAEDEMKKSEKK KKLVESFEELGLNEEVMGAVREM I+VPTEIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKK-KKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

A0A6J1CPE5 DEAD-box ATP-dependent RNA helicase 39

1.5e-21

84.21

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKK--LVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLKE ASKTK  RSTLS SVG AEDEM K+EKKKK  LVESFEELGLNEEVMGAVREM IEVPTEIQCIGIP  L
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKK--LVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

SwissProt top hits

e value

%identity

Alignment

Q56X76 DEAD-box ATP-dependent RNA helicase 39

9.7e-13

61.97

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIP
        RHLKE A   KP +   S  VG  E+E    +K KKLVE+F+ELGL+EEVMGA++E++IEVPTEIQCIGIP
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIP

Q5VRY0 DEAD-box ATP-dependent RNA helicase 39

3.6e-07

42.67

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Query:  RHLKEFASKT-KPTRSTLSHSVGSAEDEMKKSEKKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL
        RHLK   + T +P +       G    +  + +++ ++V+SFEELGL EEVM A+ EM I  PTEIQC+G+P  L
Subjt:  RHLKEFASKT-KPTRSTLSHSVGSAEDEMKKSEKKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKL

Arabidopsis top hits

e value

%identity

Alignment

AT4G09730.1 RH39

6.9e-14

61.97

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Query:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIP
        RHLKE A   KP +   S  VG  E+E    +K KKLVE+F+ELGL+EEVMGA++E++IEVPTEIQCIGIP
Subjt:  RHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIP

Sequences

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CDS sequence

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ATGACCGAACCGAACCAGGTTTGGTTCCCTGTTTTGCCCCCACATATAAGATATACGCTGATACGCGTAAGTTCATTCAGATCTAGGGTTTTTCGTCTTCGTTTTCTTTG
CCTGAACCGCCTCTCCTCTCGTGCTCGTGGTTGTCGTCGTCGCCAATGCTGTTTAAGAGCCTCGTCTTCGTCTCCGCCGCATCAACCTCGTCGTCGCCGCACGTCTCTGG
GTTTTCGCCGCCGTCGAAGTCGAAGTTGTGCCATCTGGTTTAAGTCGCCACCGCCATCACCATCTCAGGATTTCGGCCTCTTTACTCTGCTACCACCTCCACGACCTCCC
CATAATCCGTGGAAACAACCCAGGCATCTCAAAGAATTTGCTTCTAAAACTAAGCCTACGAGAAGCACTCTGTCACACTCTGTGGGAAGTGCTGAGGATGAAATGAAGAA
GTCAGAGAAGAAGAAGAAATTGGTTGAAAGCTTTGAAGAGTTGGGTCTGAATGAGGAGGTCATGGGGGCTGTGAGGGAGATGAGCATTGAGGTTCCAACTGAGATTCAGT
GCATTGGAATTCCAATTAAATTAGTTTAA

mRNA sequence

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Protein sequence

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MTEPNQVWFPVLPPHIRYTLIRVSSFRSRVFRLRFLCLNRLSSRARGCRRRQCCLRASSSSPPHQPRRRRTSLGFRRRRSRSCAIWFKSPPPSPSQDFGLFTLLPPPRPP
HNPWKQPRHLKEFASKTKPTRSTLSHSVGSAEDEMKKSEKKKKLVESFEELGLNEEVMGAVREMSIEVPTEIQCIGIPIKLV

Lag0028840 (gene) of Sponge gourd (AG-4) v1 genome