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Lag0028848 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028848
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:31807939..31808337
RNA-Seq ExpressionLag0028848
SyntenyLag0028848
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RCV43115.1 hypothetical protein SETIT_9G269300v2 [Setaria italica]1.3e-0532.99Show/hide
Query:  RRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNRID
        RR   W P PE + K+ +D  +V    + G+  I KN  GE++  +   I     A  A+ KA  EG+ LA     G ++VE+DC + +K + +R D
Subjt:  RRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNRID

XP_010686140.1 PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris]1.3e-0531.11Show/hide
Query:  WLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNR
        W    + + KI VDA      LS G+  +C++  G I+  ++  I  N + P+A+ +A+ EG+ +AK+LG  K+++ESDC + ++ +  +
Subjt:  WLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNR

XP_023874626.1 uncharacterized protein LOC111987155 [Quercus suber]2.2e-0537.78Show/hide
Query:  NACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCV
        N  WLP    ++KI  D    S   S GI  + +N  G +MGA S  I+M L A   + +A+ EG+ LA  LG  KI++ESD +  +  V
Subjt:  NACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCV

XP_024042921.1 uncharacterized protein LOC112099707 [Citrus clementina]2.2e-0532.22Show/hide
Query:  WLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNR
        W P P+N++K+ VDA   +     G+  + +N NG+I+ A+      N +   A+ +AI  G+ +A+S G   ++ ESDC  A+   +NR
Subjt:  WLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNR

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]3.6e-0836.96Show/hide
Query:  WLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNL---KAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSN
        WLP P+N +K+ VDA + S  LS G+  + ++ NG+I+ A    +N NL    A LA+ +A+  GL LA++     +++ESDC++ ++ V+N
Subjt:  WLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNL---KAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSN

TrEMBL top hitse value%identityAlignment
A0A2P6S9C4 Putative ribonuclease H-like domain-containing protein3.1e-0531.53Show/hide
Query:  SGSKFEVIPIKLSSPVSHSDGDRRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGK
        + S+F  IP  LS  +        +  W P P + WKI  DA W SS LS G+  + ++  G ++   S  +N    +  A+  AI  GL+LA S+    
Subjt:  SGSKFEVIPIKLSSPVSHSDGDRRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGK

Query:  IMVESDCVQAI
          +ESD +  I
Subjt:  IMVESDCVQAI

A0A7N2N0U9 RNase H domain-containing protein1.5e-0437.35Show/hide
Query:  RNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESD
        R+  W P  E ++K+ VD        S GI  + +N  G+IMGA S  +N+ L A   + KA  EGL LA  LG  ++++E D
Subjt:  RNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESD

A0A7N2R0C3 Reverse transcriptase domain-containing protein1.2e-0430.83Show/hide
Query:  MKGLDFELPEEISGSKFEVIPIKLSSPVSHSDGDRRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFE
        +K  +  + E  SG+  E +P+++           R   W P  E ++K  VD        S GI  + +N  G+IMGA S  +N+ L A   + KA  E
Subjt:  MKGLDFELPEEISGSKFEVIPIKLSSPVSHSDGDRRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFE

Query:  GLNLAKSLGCGKIMVESDCV
        GL LA  LG  ++++E D +
Subjt:  GLNLAKSLGCGKIMVESDCV

A0A803P9C5 Uncharacterized protein9.0e-0536.56Show/hide
Query:  ACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNRI
        A W P PEN +K+ VDA   SS    GI  I +N  G+++GA S     N K+   + KA+F GL+ AK        VE+DC+  +  ++  I
Subjt:  ACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNRI

K4AJQ9 Uncharacterized protein6.3e-0632.99Show/hide
Query:  RRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNRID
        RR   W P PE + K+ +D  +V    + G+  I KN  GE++  +   I     A  A+ KA  EG+ LA     G ++VE+DC + +K + +R D
Subjt:  RRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGCGKIMVESDCVQAIKCVSNRID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGGTTGGATTTTGAATTACCTGAAGAAATTTCTGGAAGCAAATTCGAGGTCATCCCCATCAAGCTAAGTAGTCCGGTGTCTCACTCTGATGGTGATCGTCGGAA
TGCATGTTGGCTTCCTTCGCCTGAAAACTTTTGGAAGATAATTGTCGATGCTGTGTGGGTGTCTTCCCCTCTGTCGACGGGAATCAAAACCATATGCAAGAACTTGAATG
GAGAAATCATGGGCGCATCTTCTTCCTTTATTAATATGAATCTTAAAGCCCCTCTAGCAAAATTGAAAGCAATCTTTGAAGGTCTCAATTTGGCAAAATCTCTCGGCTGT
GGAAAAATAATGGTTGAGTCTGACTGTGTTCAAGCCATAAAATGCGTGTCAAATCGCATAGATACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGGTTGGATTTTGAATTACCTGAAGAAATTTCTGGAAGCAAATTCGAGGTCATCCCCATCAAGCTAAGTAGTCCGGTGTCTCACTCTGATGGTGATCGTCGGAA
TGCATGTTGGCTTCCTTCGCCTGAAAACTTTTGGAAGATAATTGTCGATGCTGTGTGGGTGTCTTCCCCTCTGTCGACGGGAATCAAAACCATATGCAAGAACTTGAATG
GAGAAATCATGGGCGCATCTTCTTCCTTTATTAATATGAATCTTAAAGCCCCTCTAGCAAAATTGAAAGCAATCTTTGAAGGTCTCAATTTGGCAAAATCTCTCGGCTGT
GGAAAAATAATGGTTGAGTCTGACTGTGTTCAAGCCATAAAATGCGTGTCAAATCGCATAGATACCTAG
Protein sequenceShow/hide protein sequence
MKGLDFELPEEISGSKFEVIPIKLSSPVSHSDGDRRNACWLPSPENFWKIIVDAVWVSSPLSTGIKTICKNLNGEIMGASSSFINMNLKAPLAKLKAIFEGLNLAKSLGC
GKIMVESDCVQAIKCVSNRIDT